FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6351, 377 aa 1>>>pF1KE6351 377 - 377 aa - 377 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3938+/-0.000857; mu= 16.3546+/- 0.051 mean_var=64.2791+/-12.764, 0's: 0 Z-trim(106.4): 18 B-trim: 11 in 1/50 Lambda= 0.159970 statistics sampled from 8941 (8953) to 8941 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.275), width: 16 Scan time: 1.970 The best scores are: opt bits E(32554) CCDS13182.1 HM13 gene_id:81502|Hs108|chr20 ( 377) 2453 574.8 4.4e-164 CCDS13183.1 HM13 gene_id:81502|Hs108|chr20 ( 394) 2285 536.0 2.1e-152 CCDS42861.1 HM13 gene_id:81502|Hs108|chr20 ( 426) 2285 536.0 2.3e-152 >>CCDS13182.1 HM13 gene_id:81502|Hs108|chr20 (377 aa) initn: 2453 init1: 2453 opt: 2453 Z-score: 3059.3 bits: 574.8 E(32554): 4.4e-164 Smith-Waterman score: 2453; 99.7% identity (99.7% similar) in 377 aa overlap (1-377:1-377) 10 20 30 40 50 60 pF1KE6 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKFFEAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS13 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTES 310 320 330 340 350 360 370 pF1KE6 KEGTEASASKGLEKKEK ::::::::::::::::: CCDS13 KEGTEASASKGLEKKEK 370 >>CCDS13183.1 HM13 gene_id:81502|Hs108|chr20 (394 aa) initn: 2274 init1: 2274 opt: 2285 Z-score: 2849.5 bits: 536.0 E(32554): 2.1e-152 Smith-Waterman score: 2285; 93.1% identity (95.5% similar) in 379 aa overlap (1-375:1-379) 10 20 30 40 50 60 pF1KE6 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKFFEAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS13 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESN---PKDPAAV ::::::::::::::::::::::::::::::::::::::::::::::: : :. : . CCDS13 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 310 320 330 340 350 360 360 370 pF1KE6 T-ESKEGTEASASKGLEKKEK . :. :: . ....: CCDS13 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAM 370 380 390 >>CCDS42861.1 HM13 gene_id:81502|Hs108|chr20 (426 aa) initn: 2274 init1: 2274 opt: 2285 Z-score: 2849.0 bits: 536.0 E(32554): 2.3e-152 Smith-Waterman score: 2285; 93.1% identity (95.5% similar) in 379 aa overlap (1-375:1-379) 10 20 30 40 50 60 pF1KE6 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKFFEAPI :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS42 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESN---PKDPAAV ::::::::::::::::::::::::::::::::::::::::::::::: : :. : . CCDS42 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 310 320 330 340 350 360 360 370 pF1KE6 T-ESKEGTEASASKGLEKKEK . :. :: . ....: CCDS42 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKG 370 380 390 400 410 420 377 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:22:44 2016 done: Tue Nov 8 12:22:44 2016 Total Scan time: 1.970 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]