FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1353, 207 aa 1>>>pF1KE1353 207 - 207 aa - 207 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.5967+/-0.000327; mu= -4.1029+/- 0.020 mean_var=251.0693+/-50.971, 0's: 0 Z-trim(124.2): 37 B-trim: 342 in 1/56 Lambda= 0.080943 statistics sampled from 45279 (45316) to 45279 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.531), width: 16 Scan time: 6.870 The best scores are: opt bits E(85289) NP_003368 (OMIM: 601398) vascular endothelial grow ( 207) 1435 179.2 4.1e-45 NP_001230662 (OMIM: 601398) vascular endothelial g ( 188) 970 124.9 8.5e-29 NP_001165094 (OMIM: 192240,603933) vascular endoth ( 232) 380 56.0 5.5e-08 NP_001165095 (OMIM: 192240,603933) vascular endoth ( 215) 375 55.4 7.8e-08 NP_001191313 (OMIM: 192240,603933) vascular endoth ( 171) 372 55.0 8.3e-08 NP_001020537 (OMIM: 192240,603933) vascular endoth ( 412) 380 56.2 8.6e-08 NP_001165096 (OMIM: 192240,603933) vascular endoth ( 209) 373 55.2 8.9e-08 NP_003367 (OMIM: 192240,603933) vascular endotheli ( 395) 375 55.6 1.2e-07 NP_001165099 (OMIM: 192240,603933) vascular endoth ( 147) 364 54.0 1.4e-07 NP_001020538 (OMIM: 192240,603933) vascular endoth ( 389) 373 55.4 1.4e-07 NP_001191314 (OMIM: 192240,603933) vascular endoth ( 351) 372 55.2 1.5e-07 NP_001165098 (OMIM: 192240,603933) vascular endoth ( 174) 362 53.9 1.9e-07 NP_001165100 (OMIM: 192240,603933) vascular endoth ( 191) 362 53.9 2e-07 NP_001165097 (OMIM: 192240,603933) vascular endoth ( 191) 362 53.9 2e-07 NP_001303939 (OMIM: 192240,603933) vascular endoth ( 213) 362 53.9 2.2e-07 NP_001020541 (OMIM: 192240,603933) vascular endoth ( 327) 364 54.3 2.6e-07 NP_001020540 (OMIM: 192240,603933) vascular endoth ( 354) 362 54.1 3.3e-07 NP_001020539 (OMIM: 192240,603933) vascular endoth ( 371) 362 54.1 3.4e-07 NP_001028928 (OMIM: 192240,603933) vascular endoth ( 371) 362 54.1 3.4e-07 NP_001165101 (OMIM: 192240,603933) vascular endoth ( 137) 341 51.3 8.6e-07 NP_001273973 (OMIM: 192240,603933) vascular endoth ( 163) 342 51.5 9.1e-07 NP_001165093 (OMIM: 192240,603933) vascular endoth ( 317) 341 51.6 1.6e-06 NP_001280572 (OMIM: 601121) placenta growth factor ( 169) 280 44.3 0.00014 NP_002623 (OMIM: 601121) placenta growth factor is ( 170) 278 44.0 0.00017 NP_001193941 (OMIM: 601121) placenta growth factor ( 149) 274 43.5 0.00021 >>NP_003368 (OMIM: 601398) vascular endothelial growth f (207 aa) initn: 1435 init1: 1435 opt: 1435 Z-score: 930.9 bits: 179.2 E(85289): 4.1e-45 Smith-Waterman score: 1435; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207) 10 20 30 40 50 60 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGPSAHAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGPSAHAAP 130 140 150 160 170 180 190 200 pF1KE1 STTSALTPGPAAAAADAAASSVAKGGA ::::::::::::::::::::::::::: NP_003 STTSALTPGPAAAAADAAASSVAKGGA 190 200 >>NP_001230662 (OMIM: 601398) vascular endothelial growt (188 aa) initn: 966 init1: 944 opt: 970 Z-score: 638.0 bits: 124.9 E(85289): 8.5e-29 Smith-Waterman score: 970; 91.7% identity (93.6% similar) in 156 aa overlap (1-149:1-156) 10 20 30 40 50 60 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 QCECRPKKKDSAVKPD--RAATP-----HHRPQPRSVPGWDSAPGAPSPADITHPTPAPG :::::::::::::::: : : :.::.::. NP_001 QCECRPKKKDSAVKPDSPRPLCPRCTQHHQRPDPRTCRCRCRRRSFLRCQGRGLELNPDT 130 140 150 160 170 180 180 190 200 pF1KE1 PSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA NP_001 CRCRKLRR >>NP_001165094 (OMIM: 192240,603933) vascular endothelia (232 aa) initn: 254 init1: 254 opt: 380 Z-score: 264.4 bits: 56.0 E(85289): 5.5e-08 Smith-Waterman score: 380; 37.9% identity (61.6% similar) in 177 aa overlap (10-174:12-186) 10 20 30 40 50 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVVSWIDVYTRATCQPREVVVP :: :: : :. . : : : ....::...::: :. :.: :..: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQ-LGEM . : . . :::: ..:::::: :.::::::: . .. :::. :. ..: .::: NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 120 130 140 150 160 pF1KE1 SLEEHSQCECRPKKKDSAVKPDRAATPHHRPQPRS-----VPGWDSAPGAPS---PADIT :. .:..::::::: : : . ... . . : :. .:. :: : .. NP_001 SFLQHNKCECRPKK-DRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLMPWSLP 130 140 150 160 170 170 180 190 200 pF1KE1 HPTPAPGPSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA : : :: NP_001 GPHPC-GPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 180 190 200 210 220 230 >>NP_001165095 (OMIM: 192240,603933) vascular endothelia (215 aa) initn: 254 init1: 254 opt: 375 Z-score: 261.7 bits: 55.4 E(85289): 7.8e-08 Smith-Waterman score: 375; 39.4% identity (65.0% similar) in 160 aa overlap (10-160:12-169) 10 20 30 40 50 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVVSWIDVYTRATCQPREVVVP :: :: : :. . : : : ....::...::: :. :.: :..: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQ-LGEM . : . . :::: ..:::::: :.::::::: . .. :::. :. ..: .::: NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 120 130 140 150 160 pF1KE1 SLEEHSQCECRPKKKDSAVKPDRAATPHHRPQPRS-----VPGWDSAPGAPSPADITHPT :. .:..::::::: : : . ... . . : :. .: :.: .: NP_001 SFLQHNKCECRPKK-DRARQEKKSVRGKGKGQKRKRKKSRYKSW-SVPCGPCSERRKHLF 130 140 150 160 170 170 180 190 200 pF1KE1 PAPGPSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA NP_001 VQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 180 190 200 210 >>NP_001191313 (OMIM: 192240,603933) vascular endothelia (171 aa) initn: 254 init1: 254 opt: 372 Z-score: 261.2 bits: 55.0 E(85289): 8.3e-08 Smith-Waterman score: 372; 41.3% identity (67.1% similar) in 143 aa overlap (10-148:12-153) 10 20 30 40 50 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVVSWIDVYTRATCQPREVVVP :: :: : :. . : : : ....::...::: :. :.: :..: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQ-LGEM . : . . :::: ..:::::: :.::::::: . .. :::. :. ..: .::: NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SLEEHSQCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGP :. .:..::::::: : : . ... . . : : NP_001 SFLQHNKCECRPKK-DRARQEKKSVRGKGKGQKRKRKKSRYKSWSVCDKPRR 130 140 150 160 170 180 190 200 pF1KE1 SAHAAPSTTSALTPGPAAAAADAAASSVAKGGA >>NP_001020537 (OMIM: 192240,603933) vascular endothelia (412 aa) initn: 254 init1: 254 opt: 380 Z-score: 260.9 bits: 56.2 E(85289): 8.6e-08 Smith-Waterman score: 380; 37.9% identity (61.6% similar) in 177 aa overlap (10-174:192-366) 10 20 30 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVV :: :: : :. . : : : ....:: NP_001 SPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVV 170 180 190 200 210 220 40 50 60 70 80 90 pF1KE1 SWIDVYTRATCQPREVVVPLTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQ ...::: :. :.: :..: . : . . :::: ..:::::: :.::::::: . . NP_001 KFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESN 230 240 250 260 270 280 100 110 120 130 140 150 pF1KE1 VRMQILMIRYPSSQ-LGEMSLEEHSQCECRPKKKDSAVKPDRAATPHHRPQPRS-----V . :::. :. ..: .::::. .:..::::::: : : . ... . . : :. NP_001 ITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKK-DRARQEKKSVRGKGKGQKRKRKKSRY 290 300 310 320 330 340 160 170 180 190 200 pF1KE1 PGWDSAPGAPS---PADITHPTPAPGPSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA .:. :: : .. : : :: NP_001 KSWSVYVGARCCLMPWSLPGPHPC-GPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLE 350 360 370 380 390 >>NP_001165096 (OMIM: 192240,603933) vascular endothelia (209 aa) initn: 254 init1: 254 opt: 373 Z-score: 260.6 bits: 55.2 E(85289): 8.9e-08 Smith-Waterman score: 373; 40.0% identity (65.2% similar) in 155 aa overlap (10-160:12-163) 10 20 30 40 50 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVVSWIDVYTRATCQPREVVVP :: :: : :. . : : : ....::...::: :. :.: :..: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQ-LGEM . : . . :::: ..:::::: :.::::::: . .. :::. :. ..: .::: NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SLEEHSQCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGP :. .:..::::::: : : . ... . . : :. : : .: NP_001 SFLQHNKCECRPKK-DRARQEKKSVRGKGKGQKRKRK--KSRPCGPCSERRKHLFVQDPQ 130 140 150 160 170 180 190 200 pF1KE1 SAHAAPSTTSALTPGPAAAAADAAASSVAKGGA NP_001 TCKCSCKNTDSRCKARQLELNERTCRCDKPRR 180 190 200 >>NP_003367 (OMIM: 192240,603933) vascular endothelial g (395 aa) initn: 254 init1: 254 opt: 375 Z-score: 258.0 bits: 55.6 E(85289): 1.2e-07 Smith-Waterman score: 375; 39.4% identity (65.0% similar) in 160 aa overlap (10-160:192-349) 10 20 30 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVV :: :: : :. . : : : ....:: NP_003 SPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVV 170 180 190 200 210 220 40 50 60 70 80 90 pF1KE1 SWIDVYTRATCQPREVVVPLTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQ ...::: :. :.: :..: . : . . :::: ..:::::: :.::::::: . . NP_003 KFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESN 230 240 250 260 270 280 100 110 120 130 140 150 pF1KE1 VRMQILMIRYPSSQ-LGEMSLEEHSQCECRPKKKDSAVKPDRAATPHHRPQPRS-----V . :::. :. ..: .::::. .:..::::::: : : . ... . . : :. NP_003 ITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKK-DRARQEKKSVRGKGKGQKRKRKKSRY 290 300 310 320 330 340 160 170 180 190 200 pF1KE1 PGWDSAPGAPSPADITHPTPAPGPSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA .: :.: .: NP_003 KSW-SVPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 350 360 370 380 390 >>NP_001165099 (OMIM: 192240,603933) vascular endothelia (147 aa) initn: 254 init1: 254 opt: 364 Z-score: 257.0 bits: 54.0 E(85289): 1.4e-07 Smith-Waterman score: 364; 42.6% identity (67.6% similar) in 136 aa overlap (10-137:12-147) 10 20 30 40 50 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVVSWIDVYTRATCQPREVVVP :: :: : :. . : : : ....::...::: :. :.: :..: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQ-LGEM . : . . :::: ..:::::: :.::::::: . .. :::. :. ..: .::: NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SLEEHSQCECRPKK----KDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTP :. .:..::::::: ... :: : NP_001 SFLQHNKCECRPKKDRARQEKCDKPRR 130 140 >>NP_001020538 (OMIM: 192240,603933) vascular endothelia (389 aa) initn: 254 init1: 254 opt: 373 Z-score: 256.8 bits: 55.4 E(85289): 1.4e-07 Smith-Waterman score: 373; 40.0% identity (65.2% similar) in 155 aa overlap (10-160:192-343) 10 20 30 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPG---HQRKVV :: :: : :. . : : : ....:: NP_001 SPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVV 170 180 190 200 210 220 40 50 60 70 80 90 pF1KE1 SWIDVYTRATCQPREVVVPLTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQ ...::: :. :.: :..: . : . . :::: ..:::::: :.::::::: . . NP_001 KFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESN 230 240 250 260 270 280 100 110 120 130 140 150 pF1KE1 VRMQILMIRYPSSQ-LGEMSLEEHSQCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDS . :::. :. ..: .::::. .:..::::::: : : . ... . . : :. : NP_001 ITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKK-DRARQEKKSVRGKGKGQKRKRK--KS 290 300 310 320 330 160 170 180 190 200 pF1KE1 APGAPSPADITHPTPAPGPSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA : .: NP_001 RPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 340 350 360 370 380 207 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:09:15 2016 done: Sun Nov 6 23:09:16 2016 Total Scan time: 6.870 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]