FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1353, 207 aa 1>>>pF1KE1353 207 - 207 aa - 207 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.1105+/-0.000829; mu= -0.9447+/- 0.050 mean_var=238.8861+/-48.334, 0's: 0 Z-trim(116.8): 28 B-trim: 164 in 2/49 Lambda= 0.082981 statistics sampled from 17447 (17475) to 17447 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.537), width: 16 Scan time: 2.310 The best scores are: opt bits E(32554) CCDS8062.1 VEGFB gene_id:7423|Hs108|chr11 ( 207) 1435 183.2 9.9e-47 CCDS58144.1 VEGFB gene_id:7423|Hs108|chr11 ( 188) 970 127.5 5.2e-30 >>CCDS8062.1 VEGFB gene_id:7423|Hs108|chr11 (207 aa) initn: 1435 init1: 1435 opt: 1435 Z-score: 952.5 bits: 183.2 E(32554): 9.9e-47 Smith-Waterman score: 1435; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207) 10 20 30 40 50 60 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGPSAHAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 QCECRPKKKDSAVKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGPSAHAAP 130 140 150 160 170 180 190 200 pF1KE1 STTSALTPGPAAAAADAAASSVAKGGA ::::::::::::::::::::::::::: CCDS80 STTSALTPGPAAAAADAAASSVAKGGA 190 200 >>CCDS58144.1 VEGFB gene_id:7423|Hs108|chr11 (188 aa) initn: 966 init1: 944 opt: 970 Z-score: 652.2 bits: 127.5 E(32554): 5.2e-30 Smith-Waterman score: 970; 91.7% identity (93.6% similar) in 156 aa overlap (1-149:1-156) 10 20 30 40 50 60 pF1KE1 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MSPLLRRLLLAALLQLAPAQAPVSQPDAPGHQRKVVSWIDVYTRATCQPREVVVPLTVEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTGQHQVRMQILMIRYPSSQLGEMSLEEHS 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 QCECRPKKKDSAVKPD--RAATP-----HHRPQPRSVPGWDSAPGAPSPADITHPTPAPG :::::::::::::::: : : :.::.::. CCDS58 QCECRPKKKDSAVKPDSPRPLCPRCTQHHQRPDPRTCRCRCRRRSFLRCQGRGLELNPDT 130 140 150 160 170 180 180 190 200 pF1KE1 PSAHAAPSTTSALTPGPAAAAADAAASSVAKGGA CCDS58 CRCRKLRR 207 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:09:15 2016 done: Sun Nov 6 23:09:15 2016 Total Scan time: 2.310 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]