Result of FASTA (omim) for
pFN21AE6120
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6120, 114 aa
1>>>pF1KE6120 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0079+/-0.000287; mu= 12.2097+/- 0.018
mean_var=58.8857+/-11.788, 0's: 0 Z-trim(117.3): 16 B-trim: 0 in 0/52
Lambda= 0.167136
statistics sampled from 29194 (29201) to 29194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.342), width: 16
Scan time: 3.650
The best scores are: opt bits E(85289)
NP_001305965 (OMIM: 605771) cytochrome c oxidase s ( 114) 753 188.9 1.5e-48
NP_004709 (OMIM: 605771) cytochrome c oxidase subu ( 114) 753 188.9 1.5e-48
NP_001305966 (OMIM: 605771) cytochrome c oxidase s ( 111) 588 149.2 1.4e-36
NP_001305967 (OMIM: 605771) cytochrome c oxidase s ( 70) 450 115.8 9.6e-27
NP_001305969 (OMIM: 605771) cytochrome c oxidase s ( 75) 450 115.8 1e-26
NP_001856 (OMIM: 123996) cytochrome c oxidase subu ( 115) 220 60.4 7.2e-10
NP_001855 (OMIM: 123995) cytochrome c oxidase subu ( 79) 195 54.3 3.4e-08
>>NP_001305965 (OMIM: 605771) cytochrome c oxidase subun (114 aa)
initn: 753 init1: 753 opt: 753 Z-score: 992.8 bits: 188.9 E(85289): 1.5e-48
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE6 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
70 80 90 100 110
>>NP_004709 (OMIM: 605771) cytochrome c oxidase subunit (114 aa)
initn: 753 init1: 753 opt: 753 Z-score: 992.8 bits: 188.9 E(85289): 1.5e-48
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KE6 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
70 80 90 100 110
>>NP_001305966 (OMIM: 605771) cytochrome c oxidase subun (111 aa)
initn: 588 init1: 588 opt: 588 Z-score: 778.0 bits: 149.2 E(85289): 1.4e-36
Smith-Waterman score: 588; 100.0% identity (100.0% similar) in 90 aa overlap (25-114:22-111)
10 20 30 40 50 60
pF1KE6 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
::::::::::::::::::::::::::::::::::::
NP_001 MDGNCWGCEKPGALTGVVIDLGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
10 20 30 40 50
70 80 90 100 110
pF1KE6 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
60 70 80 90 100 110
>>NP_001305967 (OMIM: 605771) cytochrome c oxidase subun (70 aa)
initn: 450 init1: 450 opt: 450 Z-score: 601.1 bits: 115.8 E(85289): 9.6e-27
Smith-Waterman score: 450; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KE6 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
::::::::
NP_001 PELQKFFQCI
70
>>NP_001305969 (OMIM: 605771) cytochrome c oxidase subun (75 aa)
initn: 450 init1: 450 opt: 450 Z-score: 600.7 bits: 115.8 E(85289): 1e-26
Smith-Waterman score: 450; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KE6 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
::::::::
NP_001 PELQKFFQLMVCPST
70
>>NP_001856 (OMIM: 123996) cytochrome c oxidase subunit (115 aa)
initn: 231 init1: 220 opt: 220 Z-score: 298.2 bits: 60.4 E(85289): 7.2e-10
Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (57-114:57-114)
30 40 50 60 70 80
pF1KE6 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML
:::::: ::.::. : .:.::: :. : .:
NP_001 WSVTAKMLRNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL
30 40 50 60 70 80
90 100 110
pF1KE6 YRTTMALTVGGTIYCLIALYMASQPKNK
::.:: :::::: : . : .:: ::..
NP_001 YRATMILTVGGTAYAIYELAVASFPKKQE
90 100 110
>>NP_001855 (OMIM: 123995) cytochrome c oxidase subunit (79 aa)
initn: 189 init1: 178 opt: 195 Z-score: 268.0 bits: 54.3 E(85289): 3.4e-08
Smith-Waterman score: 195; 50.9% identity (78.9% similar) in 57 aa overlap (57-113:23-79)
30 40 50 60 70 80
pF1KE6 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML
.:.: : ::.::. . .:.::: :. :..:
NP_001 MQALRVSQALIRSFSSTARNRFQNRVREKQKLFQEDNDIPLYLKGGIVDNIL
10 20 30 40 50
90 100 110
pF1KE6 YRTTMALTVGGTIYCLIALYMASQPKNK
::.::.: .:::.: : .: :: :.:
NP_001 YRVTMTLCLGGTVYSLYSLGWASFPRN
60 70
114 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:37:37 2016 done: Tue Nov 8 09:37:38 2016
Total Scan time: 3.650 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]