FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3905, 445 aa 1>>>pF1KE3905 445 - 445 aa - 445 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6754+/-0.000453; mu= 21.0969+/- 0.028 mean_var=62.2532+/-12.473, 0's: 0 Z-trim(109.0): 36 B-trim: 6 in 1/52 Lambda= 0.162552 statistics sampled from 17159 (17175) to 17159 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.201), width: 16 Scan time: 7.660 The best scores are: opt bits E(85289) NP_001485 (OMIM: 600767) rab GDP dissociation inhi ( 445) 2937 697.9 1.4e-200 XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dis ( 423) 2797 665.0 1e-190 NP_001484 (OMIM: 300104,300849) rab GDP dissociati ( 447) 2642 628.7 9.4e-180 NP_001108628 (OMIM: 600767) rab GDP dissociation i ( 400) 2094 500.1 4.2e-141 NP_001812 (OMIM: 118825) rab proteins geranylgeran ( 656) 438 112.0 4.9e-24 XP_016884735 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22 XP_016884733 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22 XP_016884734 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22 NP_001307888 (OMIM: 300390,303100) rab proteins ge ( 505) 408 104.8 5.3e-22 XP_016884732 (OMIM: 300390,303100) PREDICTED: rab ( 505) 408 104.8 5.3e-22 XP_016884731 (OMIM: 300390,303100) PREDICTED: rab ( 602) 408 104.9 6.1e-22 NP_000381 (OMIM: 300390,303100) rab proteins geran ( 653) 408 104.9 6.5e-22 NP_001138886 (OMIM: 300390,303100) rab proteins ge ( 110) 153 44.5 0.00017 >>NP_001485 (OMIM: 600767) rab GDP dissociation inhibito (445 aa) initn: 2937 init1: 2937 opt: 2937 Z-score: 3722.0 bits: 697.9 E(85289): 1.4e-200 Smith-Waterman score: 2937; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445) 10 20 30 40 50 60 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 370 380 390 400 410 420 430 440 pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED ::::::::::::::::::::::::: NP_001 YKRMTGSEFDFEEMKRKKNDIYGED 430 440 >>XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dissoci (423 aa) initn: 2797 init1: 2797 opt: 2797 Z-score: 3544.9 bits: 665.0 E(85289): 1e-190 Smith-Waterman score: 2797; 100.0% identity (100.0% similar) in 423 aa overlap (23-445:1-423) 10 20 30 40 50 60 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG :::::::::::::::::::::::::::::::::::::: XP_016 MSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 10 20 30 70 80 90 100 110 120 pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 340 350 360 370 380 390 430 440 pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED ::::::::::::::::::::::::: XP_016 YKRMTGSEFDFEEMKRKKNDIYGED 400 410 420 >>NP_001484 (OMIM: 300104,300849) rab GDP dissociation i (447 aa) initn: 2642 init1: 2642 opt: 2642 Z-score: 3348.1 bits: 628.7 E(85289): 9.4e-180 Smith-Waterman score: 2642; 86.5% identity (96.8% similar) in 444 aa overlap (1-444:1-444) 10 20 30 40 50 60 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG :.:::::::::::::::::::::::::::::::::::::::::.::::::.:::::.. NP_001 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP .:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: NP_001 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD :::.:::::.:::.:::::::::::.::::::.::.::::.::. :.:::::.::::::: NP_001 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR :::::::::::::::::::::: ::.:::::::::::::::::::::::::::::::::: NP_001 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV ::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::. NP_001 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK ::::::::::::::::::::::::::::::::::::::.:::::::::::::.:::::: NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI .::::..:::::::::.::::.:::: : : : :::.: : .:::::::::::.:::.: NP_001 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 370 380 390 400 410 420 430 440 pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED ::::.:. ::::.::::.::..:: NP_001 YKRMAGTAFDFENMKRKQNDVFGEAEQ 430 440 >>NP_001108628 (OMIM: 600767) rab GDP dissociation inhib (400 aa) initn: 2091 init1: 2091 opt: 2094 Z-score: 2654.2 bits: 500.1 E(85289): 4.2e-141 Smith-Waterman score: 2562; 89.9% identity (89.9% similar) in 445 aa overlap (1-445:1-400) 10 20 30 40 50 60 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP ::::::::::::::::::::::::: NP_001 SPPESMGRGRDWNVDLIPKFLMANG----------------------------------- 70 80 130 140 150 160 170 180 pF1KE3 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 90 100 110 120 130 190 200 210 220 230 240 pF1KE3 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 140 150 160 170 180 190 250 260 270 280 290 300 pF1KE3 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 200 210 220 230 240 250 310 320 330 340 350 360 pF1KE3 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 260 270 280 290 300 310 370 380 390 400 410 420 pF1KE3 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 320 330 340 350 360 370 430 440 pF1KE3 YKRMTGSEFDFEEMKRKKNDIYGED ::::::::::::::::::::::::: NP_001 YKRMTGSEFDFEEMKRKKNDIYGED 380 390 400 >>NP_001812 (OMIM: 118825) rab proteins geranylgeranyltr (656 aa) initn: 455 init1: 204 opt: 438 Z-score: 552.4 bits: 112.0 E(85289): 4.9e-24 Smith-Waterman score: 438; 24.3% identity (62.0% similar) in 334 aa overlap (69-392:226-549) 40 50 60 70 80 90 pF1KE3 YGGESASITPLEDLYKRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR :: .:.::. :.:...: :. .:. ..:.: NP_001 GDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLYSQGLLIDLLIKSDVSR 200 210 220 230 240 250 100 110 120 130 140 150 pF1KE3 YLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTF :..:: . .... ::. .:: ..:... :. . . ::: . :::.. .. :. : . NP_001 YVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEY-EQHPDEY 260 270 280 290 300 310 160 170 180 190 200 210 pF1KE3 EGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPC--YETINRIKLYSESL ... .. .. . : : .. :. :..:. .. : . .: : . . : NP_001 QAF--RQCSFSEYLKTKKLTPNLQHFVLHSIAMTS-----ESSCTTIDGLNATKNFLQCL 320 330 340 350 360 220 230 240 250 260 270 pF1KE3 ARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GE .:.:..:.:.:::: ::.:::: :. :..:: : : . .. ..: ..:. .. .. :. NP_001 GRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQ 370 380 390 400 410 420 280 290 300 310 320 pF1KE3 IARCKQLICDPSYVKDRVE---KVGQVIRVICILSHPIKNTN-DANSCQIIIPQNQVNRK : .: . ::..... . :. :.. : .. : .:. : .. .:.: . . NP_001 RINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVPPAEPG-A 430 440 450 460 470 480 330 340 350 360 370 380 pF1KE3 SDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALE-LLEPIEQKFVSISDLLV . : . . . . :.. .. . .: ..... ... :. : . .. .: NP_001 CAVRVTELCSSTMTCMKDTYLVHLTCS-SSKTAREDLESVVKKLFTPYTETEINEEELTK 490 500 510 520 530 540 390 400 410 420 430 440 pF1KE3 PKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRKKNDIYGED :. : NP_001 PRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEIFPTEE 550 560 570 580 590 600 >>XP_016884735 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa) initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22 Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425) 10 20 30 40 50 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY- :.:.: : : . : ..:. : .:. :: XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY :. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ... XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV . :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. . XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL : : .. .. :..:. :.. . . .. : . . :.:::..:.:.:::: XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK ::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . :: XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV . ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . . XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT 300 310 320 330 340 350 350 360 370 380 390 400 pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR .: :.. .. : . : : :: . :: :: ... . .. . .:. . XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL 360 370 380 390 400 410 420 430 440 pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED .. .. . .: .:. .:.: XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN 410 420 430 440 450 460 >>XP_016884733 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa) initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22 Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425) 10 20 30 40 50 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY- :.:.: : : . : ..:. : .:. :: XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY :. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ... XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV . :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. . XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL : : .. .. :..:. :.. . . .. : . . :.:::..:.:.:::: XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK ::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . :: XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV . ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . . XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT 300 310 320 330 340 350 350 360 370 380 390 400 pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR .: :.. .. : . : : :: . :: :: ... . .. . .:. . XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL 360 370 380 390 400 410 420 430 440 pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED .. .. . .: .:. .:.: XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN 410 420 430 440 450 460 >>XP_016884734 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa) initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22 Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425) 10 20 30 40 50 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY- :.:.: : : . : ..:. : .:. :: XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY :. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ... XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV . :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. . XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL : : .. .. :..:. :.. . . .. : . . :.:::..:.:.:::: XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK ::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . :: XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV . ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . . XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT 300 310 320 330 340 350 350 360 370 380 390 400 pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR .: :.. .. : . : : :: . :: :: ... . .. . .:. . XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL 360 370 380 390 400 410 420 430 440 pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED .. .. . .: .:. .:.: XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN 410 420 430 440 450 460 >>NP_001307888 (OMIM: 300390,303100) rab proteins gerany (505 aa) initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22 Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425) 10 20 30 40 50 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY- :.:.: : : . : ..:. : .:. :: NP_001 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY :. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ... NP_001 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV . :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. . NP_001 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL : : .. .. :..:. :.. . . .. : . . :.:::..:.:.:::: NP_001 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK ::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . :: NP_001 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV . ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . . NP_001 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT 300 310 320 330 340 350 350 360 370 380 390 400 pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR .: :.. .. : . : : :: . :: :: ... . .. . .:. . NP_001 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL 360 370 380 390 400 410 420 430 440 pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED .. .. . .: .:. .:.: NP_001 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN 410 420 430 440 450 460 >>XP_016884732 (OMIM: 300390,303100) PREDICTED: rab prot (505 aa) initn: 416 init1: 195 opt: 408 Z-score: 516.0 bits: 104.8 E(85289): 5.3e-22 Smith-Waterman score: 408; 24.6% identity (58.9% similar) in 418 aa overlap (25-421:26-425) 10 20 30 40 50 pF1KE3 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRN---PYYGGESAS-ITPL-EDLY- :.:.: : : . : ..:. : .:. :: XP_016 MSCEMLTEQTPSSDPENALEVNGAEVTGEKENHCDDKTCVPSTSAEDMSENVPIAEDTTE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 --KRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVY :. .: : . . .:: .:.::. :.:.. : :. .:. ..:.:: .:: ... XP_016 QPKKNRITYS--QIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDV . :.. .:: ..:... :. . . ::: . :::.. .. :: : ..: . . :. . XP_016 REGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEY 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGL : : .. .. :..:. :.. . . .. : . . :.:::..:.:.:::: XP_016 LKTQKLTPNLQYIVMHSIAM--TSE-TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQ 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 GELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVK ::::: : :. :..:: : : . .. ..: .. : .. .. :. .... . :: XP_016 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFP 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE3 D----RVEKVGQVIRVICILSHPIKNTNDANSCQII-IPQNQVNRKSDIYVCMISFAHNV . ::. :. :.. : .. . .:.. .. .:. .: .. . . . : . . . XP_016 ENMCSRVQ-YRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA-VRVIELCSSTMT 300 310 320 330 340 350 350 360 370 380 390 400 pF1KE3 AAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQK-FVSISDLLVPKDLGTESQIFISR .: :.. .. : . : : :: . :: :: ... . .. . .:. . XP_016 CMKGTYLVHLTCTSS--------KTAREDLESVVQKLFVPYTEMEIENEQVEKPRILWAL 360 370 380 390 400 410 420 430 440 pF1KE3 TYDA--TTHFETTC-DDI-KNIYKRMTGSEFDFEEMKRKKNDIYGED .. .. . .: .:. .:.: XP_016 YFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQEICPNEDFCPPPPN 410 420 430 440 450 460 445 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 09:05:30 2016 done: Sun Nov 6 09:05:32 2016 Total Scan time: 7.660 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]