FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6345, 369 aa 1>>>pF1KE6345 369 - 369 aa - 369 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3526+/-0.000916; mu= 15.9855+/- 0.054 mean_var=61.0985+/-12.638, 0's: 0 Z-trim(105.3): 26 B-trim: 122 in 1/48 Lambda= 0.164081 statistics sampled from 8324 (8337) to 8324 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.256), width: 16 Scan time: 2.350 The best scores are: opt bits E(32554) CCDS10698.1 HSD3B7 gene_id:80270|Hs108|chr16 ( 369) 2511 603.0 1.4e-172 CCDS45466.1 HSD3B7 gene_id:80270|Hs108|chr16 ( 196) 1200 292.5 2e-79 CCDS903.1 HSD3B1 gene_id:3283|Hs108|chr1 ( 373) 846 208.8 6.1e-54 CCDS902.1 HSD3B2 gene_id:3284|Hs108|chr1 ( 372) 820 202.7 4.3e-52 CCDS42205.1 SDR42E1 gene_id:93517|Hs108|chr16 ( 393) 453 115.8 6.4e-26 CCDS14717.1 NSDHL gene_id:50814|Hs108|chrX ( 373) 286 76.3 4.9e-14 >>CCDS10698.1 HSD3B7 gene_id:80270|Hs108|chr16 (369 aa) initn: 2511 init1: 2511 opt: 2511 Z-score: 3212.1 bits: 603.0 E(32554): 1.4e-172 Smith-Waterman score: 2511; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369) 10 20 30 40 50 60 pF1KE6 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWLEELKTGPVRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWLEELKTGPVRV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TAIQGDVTQAHEVAAAVAGAHVVIHTAGLVDVFGRASPKTIHEVNVQGTRNVIEACVQTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 TAIQGDVTQAHEVAAAVAGAHVVIHTAGLVDVFGRASPKTIHEVNVQGTRNVIEACVQTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAVHRHPYPCSKALAEWLVLEANGRKVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 TRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAVHRHPYPCSKALAEWLVLEANGRKVRG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GLPLVTCALRPTGIYGEGHQIMRDFYRQGLRLGGWLFRAIPASVEHGRVYVGNVAWMHVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GLPLVTCALRPTGIYGEGHQIMRDFYRQGLRLGGWLFRAIPASVEHGRVYVGNVAWMHVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 AARELEQRATLMGGQVYFCYDGSPYRSYEDFNMEFLGPCGLRLVGARPLLPYWLLVFLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 AARELEQRATLMGGQVYFCYDGSPYRSYEDFNMEFLGPCGLRLVGARPLLPYWLLVFLAA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LNALLQWLLRPLVLYAPLLNPYTLAVANTTFTVSTDKAQRHFGYEPLFSWEDSRTRTILW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LNALLQWLLRPLVLYAPLLNPYTLAVANTTFTVSTDKAQRHFGYEPLFSWEDSRTRTILW 310 320 330 340 350 360 pF1KE6 VQAATGSAQ ::::::::: CCDS10 VQAATGSAQ >>CCDS45466.1 HSD3B7 gene_id:80270|Hs108|chr16 (196 aa) initn: 1188 init1: 1188 opt: 1200 Z-score: 1539.2 bits: 292.5 E(32554): 2e-79 Smith-Waterman score: 1200; 96.8% identity (97.3% similar) in 187 aa overlap (1-187:1-185) 10 20 30 40 50 60 pF1KE6 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWLEELKTGPVRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWLEELKTGPVRV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TAIQGDVTQAHEVAAAVAGAHVVIHTAGLVDVFGRASPKTIHEVNVQGTRNVIEACVQTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 TAIQGDVTQAHEVAAAVAGAHVVIHTAGLVDVFGRASPKTIHEVNVQGTRNVIEACVQTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAVHRHPYPCSKALAEWLVLEANGRKVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::. CCDS45 TRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAVHRHPYPCSKALAEWLVLEANGRKAM- 130 140 150 160 170 190 200 210 220 230 240 pF1KE6 GLPLVTCALRPTGIYGEGHQIMRDFYRQGLRLGGWLFRAIPASVEHGRVYVGNVAWMHVL :: :: CCDS45 -LPGCTCWQPGSWSSGQP 180 190 >>CCDS903.1 HSD3B1 gene_id:3283|Hs108|chr1 (373 aa) initn: 643 init1: 519 opt: 846 Z-score: 1081.9 bits: 208.8 E(32554): 6.1e-54 Smith-Waterman score: 846; 39.5% identity (69.8% similar) in 354 aa overlap (13-361:7-357) 10 20 30 40 50 pF1KE6 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWL-EELKT--GP ::::. ::::....:.:. .: .: :.::.:. .:: : ::.. . CCDS90 MTGWSCLVTGAGGFLGQRIIRLLV-KEKELKEIRVLDKAFGPELREEFSKLQNK 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 VRVTAIQGDVTQAHEVAAAVAGAHVVIHTAGLVDVFGRASPKTIHEVNVQGTRNVIEACV ...:...::. . . : . :.:::: ..:::: . ..: .:::.::. ..:::: CCDS90 TKLTVLEGDILDEPFLKRACQDVSVIIHTACIIDVFGVTHRESIMNVNVKGTQLLLEACV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QTGTRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAVHRHPYPCSKALAEWLVLEANGRK :... ..::::.::.:::. . . :.:. : : . ::: :: ::: :: ::: . CCDS90 QASVPVFIYTSSIEVAGPNSYKEIIQNGHEEEPLENTWPAPYPHSKKLAEKAVLAANGWN 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 VRGGLPLVTCALRPTGIYGEGHQIMRDFYRQGLRLGGWLFRAIPASVEHGRVYVGNVAWM ...: : :::::: ::::: ... ..: .: .. .. . :::::::: CCDS90 LKNGGTLYTCALRPMYIYGEGSRFLSASINEALNNNG-ILSSVGKFSTVNPVYVGNVAWA 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 HVLAARELE--QRATLMGGQVYFCYDGSPYRSYEDFNMEFLGPCGLRLVGARPLLPYWLL :.:: : :. ..: . :: :. : .:..::...:. . :::: .: .: :. CCDS90 HILALRALQDPKKAPSIRGQFYYISDDTPHQSYDNLNYTLSKEFGLRL-DSRWSFPLSLM 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 VFLAALNALLQWLLRPLVLYAPLLNPYTLAVANTTFTVSTDKAQRHFGYEPLFSWEDSRT ... : ....::::. : : .: . ....:..:: : :::: ..:.::.:::... CCDS90 YWIGFLLEIVSFLLRPIYTYRPPFNRHIVTLSNSVFTFSYKKAQRDLAYKPLYSWEEAKQ 300 310 320 330 340 350 360 pF1KE6 RTILWVQAATGSAQ .:. :: CCDS90 KTVEWVGSLVDRHKETLKSKTQ 360 370 >>CCDS902.1 HSD3B2 gene_id:3284|Hs108|chr1 (372 aa) initn: 583 init1: 525 opt: 820 Z-score: 1048.7 bits: 202.7 E(32554): 4.3e-52 Smith-Waterman score: 820; 39.8% identity (69.5% similar) in 354 aa overlap (13-361:6-356) 10 20 30 40 50 pF1KE6 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWL-EELKT--GP ::::. :.::...::.:.. : .: :.:..:. . : : ::.. . CCDS90 MGWSCLVTGAGGLLGQRIVRLLVE-EKELKEIRALDKAFRPELREEFSKLQNR 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 VRVTAIQGDVTQAHEVAAAVAGAHVVIHTAGLVDVFGRASPKTIHEVNVQGTRNVIEACV ...:...::. . . : . :::::: ..:::: . ..: .:::.::. ..:::: CCDS90 TKLTVLEGDILDEPFLKRACQDVSVVIHTACIIDVFGVTHRESIMNVNVKGTQLLLEACV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QTGTRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAVHRHPYPCSKALAEWLVLEANGRK :... ..::::.::.:::. . . :.:. : : . ::: :: ::: :: ::: . CCDS90 QASVPVFIYTSSIEVAGPNSYKEIIQNGHEEEPLENTWPTPYPYSKKLAEKAVLAANGWN 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 VRGGLPLVTCALRPTGIYGEGHQIMRDFYRQGLRLGGWLFRAIPASVEHGRVYVGNVAWM ...: : ::::::: ::::: .. ..: .: .. .. . :::::::: CCDS90 LKNGDTLYTCALRPTYIYGEGGPFLSASINEALNNNG-ILSSVGKFSTVNPVYVGNVAWA 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 HVLAARELE--QRATLMGGQVYFCYDGSPYRSYEDFNMEFLGPCGLRLVGARPLLPYWLL :.:: : :. ..: . :: :. : .:..::...:. . :::: .: :: :. CCDS90 HILALRALRDPKKAPSVRGQFYYISDDTPHQSYDNLNYILSKEFGLRL-DSRWSLPLTLM 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 VFLAALNALLQWLLRPLVLYAPLLNPYTLAVANTTFTVSTDKAQRHFGYEPLFSWEDSRT ... : ....:: :. : : .: .:....:..:: : :::: ..:.::.:::... CCDS90 YWIGFLLEVVSFLLSPIYSYQPPFNRHTVTLSNSVFTFSYKKAQRDLAYKPLYSWEEAKQ 300 310 320 330 340 350 360 pF1KE6 RTILWVQAATGSAQ .:. :: CCDS90 KTVEWVGSLVDRHKETLKSKTQ 360 370 >>CCDS42205.1 SDR42E1 gene_id:93517|Hs108|chr16 (393 aa) initn: 240 init1: 148 opt: 453 Z-score: 578.8 bits: 115.8 E(32554): 6.4e-26 Smith-Waterman score: 453; 33.2% identity (57.7% similar) in 355 aa overlap (3-345:2-337) 10 20 30 40 50 60 pF1KE6 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPRLGELRVFDQHLGPWLEELKTGPVRV : ..:: :.::: :..: .. : : . . .:: .: .: : . CCDS42 MDPKRSQKESVLITGGSGYFGFRLGCALNQNGVH---VILFDIS-SP----AQTIPEGI 10 20 30 40 50 70 80 90 100 110 pF1KE6 TAIQGDVTQAHEVAAAVAGAHV--VIHTAGLVDVFGRA--SPKTIHEVNVQGTRNVIEAC ::::. . .: : : : :.: :. . :: . . :.::::.:: :....: CCDS42 KFIQGDIRHLSDVEKAFQDADVTCVFHIASY-GMSGREQLNRNLIKEVNVRGTDNILQVC 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 VQTGTRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAVHRHP--YPCSKALAEWLVLEAN . . :::::...:. :. . :.:. :: .: :: : .:..:: ::::: CCDS42 QRRRVPRLVYTSTFNVI---FGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAEQKVLEAN 120 130 140 150 160 180 190 200 210 220 pF1KE6 GRKV-RGGLPLVTCALRPTGIYGEGHQIMRDFYRQGLRLGGWLFRAI---PAS-VEHGRV . . :: : ::::::.:::: :.: : . : . ::. . : : :: : CCDS42 ATPLDRGDGVLRTCALRPAGIYGPGEQ--RHLPRIVSYIEKGLFKFVYGDPRSLVEF--V 170 180 190 200 210 220 230 240 250 260 270 280 pF1KE6 YVGNVAWMHVLAARELE-QRATLMGGQVYFCYDGSPYRSYEDFNMEFLGPCGLRLVGARP .: :.. :.::.. :. ... . .:: :: :: : ..: : : : . ..: CCDS42 HVDNLVQAHILASEALRADKGHIASGQPYFISDGRPVNNFEFFRPLVEG-LGYTFPSTR- 230 240 250 260 270 280 290 300 310 320 330 340 pF1KE6 LLPYWLLVFLAALNALLQWLLRPLVLYAPLLNPYTLAVANTTFTVSTDKAQRHFGYEPLF :: :. .: :. .....: : . :.:. . ...: : .::....::. CCDS42 -LPLTLVYCFAFLTEMVHFILGRLYNFQPFLTRTEVYKTGVTHYFSLEKAKKELGYKAQP 290 300 310 320 330 340 350 360 pF1KE6 SWEDSRTRTILWVQAATGSAQ CCDS42 FDLQEAVEWFKAHGHGRSSGSRDSECFVWDGLLVFLLIIAVLMWLPSSVILSL 350 360 370 380 390 >>CCDS14717.1 NSDHL gene_id:50814|Hs108|chrX (373 aa) initn: 427 init1: 174 opt: 286 Z-score: 365.5 bits: 76.3 E(32554): 4.9e-14 Smith-Waterman score: 446; 29.9% identity (55.6% similar) in 354 aa overlap (6-358:34-363) 10 20 30 pF1KE6 MADSAQAQKLVYLVTGGCGFLGEHVVRMLLQREPR : : : :: ::::.:.:..:: : CCDS14 AVSEPMRDQVARTHLTEDTPKVNADIEKVNQNQAKRCTVIGGSGFLGQHMVEQLLAR--- 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 LG-ELRVFDQHLGPWLEELKTGPVRVTAIQGDVTQAHEVAAAVAGAHVVIHTAGLVDVFG : . ::: . : . . :: . ::. . ... :. :...:.: :. . CCDS14 -GYAVNVFDIQQG-----FDNPQVRF--FLGDLCSRQDLYPALKGVNTVFHCAS--PPPS 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 RASPKTIHEVNVQGTRNVIEACVQTGTRFLVYTSSMEVVGPNTKGHPFYRGNEDTPYEAV . . ...:: ::.::::.: ..:.. :. ::: :. .: . :.:: :: CCDS14 SNNKELFYRVNYIGTKNVIETCKEAGVQKLILTSSASVI---FEGVDIKNGTEDLPYAMK 120 130 140 150 160 160 170 180 190 200 210 pF1KE6 HRHPYPCSKALAEWLVLEANGRKVRGGLPLVTCALRPTGIYGEGHQIMRDFYRQGLRLGG : .: : : :: :: . ..: :.:: ::.: . . .. : : CCDS14 PIDYYTETKILQERAVLGANDPEKN----FLTTAIRPHGIFGPRDPQLVPILIEAARNGK 170 180 190 200 210 220 220 230 240 250 260 270 pF1KE6 WLFRAIPASVEHGRVYVGNVAWMHVLAARELEQRATLMGGQVYFCYDGSPYRSYEDFNME : .. ..: ::. :.:::..: .: . .::... . : . : . CCDS14 MKFVIGNGKNLVDFTFVENVVHGHILAAEQL-SRDSTLGGKAFHITNDEPI-PFWTFLSR 230 240 250 260 270 280 280 290 300 310 320 330 pF1KE6 FLGPCGLRLVGARPLLPYWLLVFLAALNALLQWLLRPLVLYAPLLNPYTLAVANTTFTVS .: :: . . .:::. .:: : .:: .. :.. : ..:. .:.:.: : CCDS14 IL--TGLNYEAPKYHIPYWVAYYLALLLSLLVMVISPVIQLQPTFTPMRVALAGTFHYYS 290 300 310 320 330 340 350 360 pF1KE6 TDKAQRHFGYEPLFSWEDSRTRTILWVQAATGSAQ ..:.. .::.:: . .:. ::. CCDS14 CERAKKAMGYQPLVTMDDAMERTVQSFRHLRRVK 340 350 360 370 369 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:19:02 2016 done: Tue Nov 8 12:19:02 2016 Total Scan time: 2.350 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]