FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5203, 220 aa 1>>>pF1KE5203 220 - 220 aa - 220 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8539+/-0.000353; mu= 11.8042+/- 0.022 mean_var=82.6482+/-16.102, 0's: 0 Z-trim(115.1): 6 B-trim: 38 in 1/54 Lambda= 0.141077 statistics sampled from 25297 (25298) to 25297 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.297), width: 16 Scan time: 5.430 The best scores are: opt bits E(85289) NP_006618 (OMIM: 606114) ribonuclease P protein su ( 220) 1426 299.6 2.8e-81 >>NP_006618 (OMIM: 606114) ribonuclease P protein subuni (220 aa) initn: 1426 init1: 1426 opt: 1426 Z-score: 1580.3 bits: 299.6 E(85289): 2.8e-81 Smith-Waterman score: 1426; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE5 MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL 130 140 150 160 170 180 190 200 210 220 pF1KE5 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL :::::::::::::::::::::::::::::::::::::::: NP_006 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL 190 200 210 220 220 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:29:04 2016 done: Mon Nov 7 22:29:05 2016 Total Scan time: 5.430 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]