FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1365, 390 aa 1>>>pF1KE1365 390 - 390 aa - 390 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6425+/-0.000852; mu= 7.3761+/- 0.051 mean_var=159.4148+/-31.988, 0's: 0 Z-trim(112.8): 68 B-trim: 4 in 1/52 Lambda= 0.101580 statistics sampled from 13426 (13491) to 13426 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.414), width: 16 Scan time: 3.140 The best scores are: opt bits E(32554) CCDS34657.1 NCF1 gene_id:653361|Hs108|chr7 ( 390) 2646 399.3 3.1e-111 CCDS78084.1 SH3PXD2B gene_id:285590|Hs108|chr5 ( 430) 722 117.4 2.5e-26 CCDS34291.1 SH3PXD2B gene_id:285590|Hs108|chr5 ( 911) 722 117.6 4.5e-26 CCDS31278.1 SH3PXD2A gene_id:9644|Hs108|chr10 (1105) 517 87.7 5.7e-17 >>CCDS34657.1 NCF1 gene_id:653361|Hs108|chr7 (390 aa) initn: 2646 init1: 2646 opt: 2646 Z-score: 2110.6 bits: 399.3 E(32554): 3.1e-111 Smith-Waterman score: 2646; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390) 10 20 30 40 50 60 pF1KE1 MGDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MGDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 EAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RPDDLKLPTDNQTKKPETYLMPKDGKSTATDITGPIILQTYRAIANYEKTSGSEMALSTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RPDDLKLPTDNQTKKPETYLMPKDGKSTATDITGPIILQTYRAIANYEKTSGSEMALSTG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 DVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 DVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQIKRGAPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 EGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQIKRGAPP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 RRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFLQQRRRQARPGPQSPGSPLEEERQTQRSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFLQQRRRQARPGPQSPGSPLEEERQTQRSK 310 320 330 340 350 360 370 380 390 pF1KE1 PQPAVPPRPSADLILNRCSESTKRKLASAV :::::::::::::::::::::::::::::: CCDS34 PQPAVPPRPSADLILNRCSESTKRKLASAV 370 380 390 >>CCDS78084.1 SH3PXD2B gene_id:285590|Hs108|chr5 (430 aa) initn: 730 init1: 237 opt: 722 Z-score: 586.2 bits: 117.4 E(32554): 2.5e-26 Smith-Waterman score: 738; 34.9% identity (64.8% similar) in 381 aa overlap (6-368:7-368) 10 20 30 40 50 pF1KE1 MGDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFP : .. .: .:: ::..::::.. : :.. : ...:::........ . . :: CCDS78 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFP 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 IEAGAINPENRIIPHLPAPKWFDGQR---AAENRQGTLTEYCSTLMSLPTKISRCPHLLD .:.: .:..:::: ::. : .. .: .: . :::..:..:: ::.: ..:. CCDS78 MEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 FFKVRPDDLKLPTDNQTKKPETYLMPKDGKSTATDITGPIILQTYRAIANYEKTSGSEMA ::..::.::. : ... : .. : .:..: :..:. : ..:::.: .::.. CCDS78 FFETRPEDLNPPKEEHIGKKKS-----GGDQTSVD---PMVLEQYVVVANYQKQESSEIS 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKA ::.:.::...::.:::::: . ..::.::. :: :. .. . .:. : :..: CCDS78 LSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLEGQDGVQDEFSLQPEEE-EKYTVIYP 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 YTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK-SGQDVSQAQRQIK ::: . ::..: .: .::::.: :.::: :: . :. :. ::.: ::. . : CCDS78 YTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKKNSGEPLPP-----K 240 250 260 270 280 300 310 320 330 340 350 pF1KE1 RGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFLQQR--RRQARPGPQSPG---SPL : : : .: .. ::. :.: :.. . .:: : ..:: :.. . :: CCDS78 PG--PGSPSHPGALDLDGVSRQ---QNAVGREKELLSSQRDGRFEGRPVPDGDAKQRSPK 290 300 310 320 330 340 360 370 380 390 pF1KE1 EEERQTQRSK---------PQPAVPPRPSADLILNRCSESTKRKLASAV ..: : :.: .::. CCDS78 MRQRPPPRRDMTIPRGLNLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEDHKNV 350 360 370 380 390 400 >>CCDS34291.1 SH3PXD2B gene_id:285590|Hs108|chr5 (911 aa) initn: 783 init1: 237 opt: 722 Z-score: 581.6 bits: 117.6 E(32554): 4.5e-26 Smith-Waterman score: 738; 34.9% identity (64.8% similar) in 381 aa overlap (6-368:7-368) 10 20 30 40 50 pF1KE1 MGDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFP : .. .: .:: ::..::::.. : :.. : ...:::........ . . :: CCDS34 MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFP 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 IEAGAINPENRIIPHLPAPKWFDGQR---AAENRQGTLTEYCSTLMSLPTKISRCPHLLD .:.: .:..:::: ::. : .. .: .: . :::..:..:: ::.: ..:. CCDS34 MEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 FFKVRPDDLKLPTDNQTKKPETYLMPKDGKSTATDITGPIILQTYRAIANYEKTSGSEMA ::..::.::. : ... : .. : .:..: :..:. : ..:::.: .::.. CCDS34 FFETRPEDLNPPKEEHIGKKKS-----GGDQTSVD---PMVLEQYVVVANYQKQESSEIS 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKA ::.:.::...::.:::::: . ..::.::. :: :. .. . .:. : :..: CCDS34 LSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLEGQDGVQDEFSLQPEEE-EKYTVIYP 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 YTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK-SGQDVSQAQRQIK ::: . ::..: .: .::::.: :.::: :: . :. :. ::.: ::. . : CCDS34 YTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKKNSGEPLPP-----K 240 250 260 270 280 300 310 320 330 340 350 pF1KE1 RGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFLQQR--RRQARPGPQSPG---SPL : : : .: .. ::. :.: :.. . .:: : ..:: :.. . :: CCDS34 PG--PGSPSHPGALDLDGVSRQ---QNAVGREKELLSSQRDGRFEGRPVPDGDAKQRSPK 290 300 310 320 330 340 360 370 380 390 pF1KE1 EEERQTQRSK---------PQPAVPPRPSADLILNRCSESTKRKLASAV ..: : :.: .::. CCDS34 MRQRPPPRRDMTIPRGLNLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEVIEKN 350 360 370 380 390 400 >>CCDS31278.1 SH3PXD2A gene_id:9644|Hs108|chr10 (1105 aa) initn: 714 init1: 254 opt: 517 Z-score: 418.1 bits: 87.7 E(32554): 5.7e-17 Smith-Waterman score: 714; 35.5% identity (69.4% similar) in 301 aa overlap (6-294:6-306) 10 20 30 40 50 60 pF1KE1 MGDTFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPI .. ... ::: ::.::::.. : :.: . ...:::........ : . ::: CCDS31 MLAYCVQDATVVDVEKRRNPSKHYVYIINVTWSDSTSQTIYRRYSKFFDLQMQLLDKFPI 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 EAGAINPENRIIPHLPAPKWFDGQR---AAENRQGTLTEYCSTLMSLPTKISRCPHLLDF :.: .:..:::: ::. : .. .: .: . ::: .:. :: .::.: ... : CCDS31 EGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLKPIDEYCRALVRLPPHISQCDEVFRF 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 FKVRPDDLKLPT-DNQTKKPETYLMPKDGKSTATDITG------PIILQTYRAIANYEKT :..::.:.. : : ..: .. . . ..: :.:: :.::. : ...::.: CCDS31 FEARPEDVNPPKEDYGSSKRKSVWLSSWAESPKKDVTGADATAEPMILEQYVVVSNYKKQ 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 SGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEP .::..:..:.::.:.::.:::::: . . ..::.::..:: .. . : . . .:: CCDS31 ENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDDSDINTSKTGEE 190 200 210 220 230 240 240 250 260 270 280 pF1KE1 --YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVS ::... ::. ::... .: .::::.: :.::: :: :. :. ::.:. .:. CCDS31 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDDLP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE1 QAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVRFLQQRRRQARPGPQSPGS .... CCDS31 TRKKNLAGPVEIIGNIMEISNLLNKKASGDKETPPAEGEGHEAPIAKKEISLPILCNASN 310 320 330 340 350 360 390 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:22:47 2016 done: Sun Nov 6 23:22:47 2016 Total Scan time: 3.140 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]