FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5110, 157 aa 1>>>pF1KE5110 157 - 157 aa - 157 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0160+/-0.000347; mu= 10.5025+/- 0.022 mean_var=102.5404+/-20.381, 0's: 0 Z-trim(117.0): 6 B-trim: 1452 in 1/55 Lambda= 0.126656 statistics sampled from 28654 (28659) to 28654 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.336), width: 16 Scan time: 5.350 The best scores are: opt bits E(85289) NP_000977 (OMIM: 604180) 60S ribosomal protein L24 ( 157) 1015 195.0 4.2e-50 NP_057388 (OMIM: 613262) probable ribosome biogene ( 163) 271 59.0 3.7e-09 >>NP_000977 (OMIM: 604180) 60S ribosomal protein L24 [Ho (157 aa) initn: 1015 init1: 1015 opt: 1015 Z-score: 1020.4 bits: 195.0 E(85289): 4.2e-50 Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157) 10 20 30 40 50 60 pF1KE5 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ 70 80 90 100 110 120 130 140 150 pF1KE5 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR ::::::::::::::::::::::::::::::::::::: NP_000 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 130 140 150 >>NP_057388 (OMIM: 613262) probable ribosome biogenesis (163 aa) initn: 199 init1: 173 opt: 271 Z-score: 285.5 bits: 59.0 E(85289): 3.7e-09 Smith-Waterman score: 271; 31.4% identity (63.5% similar) in 156 aa overlap (1-147:1-154) 10 20 30 40 50 60 pF1KE5 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK :..: : : . :::::: ..:.: :::.: ..::.. : .:::::.. :: .:. NP_057 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 K----GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQR-EQAIRAAKEA : .: :..:.:.. .:.:: . . .. : : . .. . :.:. . .. :: NP_057 KELTVDNSFEFEKRRNE-PIKYQRELWNKTI-DAMKRVEEIKQKRQAKFIMNRLKKNKEL 70 80 90 100 110 120 130 140 150 pF1KE5 KKAKQASK-KTAMAAAKAPTKAAPKQ---KIVKPVKVSAPRVGGKR .:... .. : . .:: . :: :.:. .. NP_057 QKVQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDAP 120 130 140 150 160 157 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:25:46 2016 done: Mon Nov 7 21:25:47 2016 Total Scan time: 5.350 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]