FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6217, 264 aa 1>>>pF1KE6217 264 - 264 aa - 264 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0911+/-0.000342; mu= 15.9006+/- 0.021 mean_var=61.7292+/-12.670, 0's: 0 Z-trim(113.6): 6 B-trim: 281 in 2/50 Lambda= 0.163241 statistics sampled from 23037 (23041) to 23037 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.27), width: 16 Scan time: 5.300 The best scores are: opt bits E(85289) NP_004542 (OMIM: 252010,256000,603846) NADH dehydr ( 264) 1775 426.4 2.6e-119 >>NP_004542 (OMIM: 252010,256000,603846) NADH dehydrogen (264 aa) initn: 1775 init1: 1775 opt: 1775 Z-score: 2263.0 bits: 426.4 E(85289): 2.6e-119 Smith-Waterman score: 1775; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264) 10 20 30 40 50 60 pF1KE6 MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE 190 200 210 220 230 240 250 260 pF1KE6 AFPVYRQPPESLKLEAGDKKPDAK :::::::::::::::::::::::: NP_004 AFPVYRQPPESLKLEAGDKKPDAK 250 260 264 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:10:35 2016 done: Tue Nov 8 11:10:36 2016 Total Scan time: 5.300 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]