FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6217, 264 aa
  1>>>pF1KE6217 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1620+/-0.000768; mu= 15.2144+/- 0.046
 mean_var=58.1649+/-11.531, 0's: 0 Z-trim(106.7): 16  B-trim: 0 in 0/50
 Lambda= 0.168168
 statistics sampled from 9119 (9123) to 9119 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS7941.1 NDUFS3 gene_id:4722|Hs108|chr11         ( 264) 1775 438.7 1.9e-123


>>CCDS7941.1 NDUFS3 gene_id:4722|Hs108|chr11              (264 aa)
 initn: 1775 init1: 1775 opt: 1775  Z-score: 2329.6  bits: 438.7 E(32554): 1.9e-123
Smith-Waterman score: 1775; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KE6 MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE
              190       200       210       220       230       240

              250       260    
pF1KE6 AFPVYRQPPESLKLEAGDKKPDAK
       ::::::::::::::::::::::::
CCDS79 AFPVYRQPPESLKLEAGDKKPDAK
              250       260    




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:10:35 2016 done: Tue Nov  8 11:10:35 2016
 Total Scan time:  2.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]