FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5082, 683 aa 1>>>pF1KE5082 683 - 683 aa - 683 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3558+/-0.000853; mu= 11.6433+/- 0.052 mean_var=135.4521+/-27.027, 0's: 0 Z-trim(111.4): 18 B-trim: 13 in 1/50 Lambda= 0.110200 statistics sampled from 12341 (12355) to 12341 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.38), width: 16 Scan time: 3.070 The best scores are: opt bits E(32554) CCDS951.1 PRPF3 gene_id:9129|Hs108|chr1 ( 683) 4447 718.6 7.3e-207 >>CCDS951.1 PRPF3 gene_id:9129|Hs108|chr1 (683 aa) initn: 4447 init1: 4447 opt: 4447 Z-score: 3827.3 bits: 718.6 E(32554): 7.3e-207 Smith-Waterman score: 4447; 100.0% identity (100.0% similar) in 683 aa overlap (1-683:1-683) 10 20 30 40 50 60 pF1KE5 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE5 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS95 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH 610 620 630 640 650 660 670 680 pF1KE5 FKKHGAEHYWDLALSESVLESTD ::::::::::::::::::::::: CCDS95 FKKHGAEHYWDLALSESVLESTD 670 680 683 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:51:11 2016 done: Tue Nov 8 04:51:11 2016 Total Scan time: 3.070 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]