FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0532, 154 aa
  1>>>pF1KE0532 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8888+/-0.000337; mu= 13.7156+/- 0.021
 mean_var=56.9535+/-11.390, 0's: 0 Z-trim(114.2): 10  B-trim: 362 in 1/54
 Lambda= 0.169947
 statistics sampled from 23897 (23901) to 23897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.28), width:  16
 Scan time:  4.260

The best scores are:                                      opt bits E(85289)
NP_002481 (OMIM: 602138) NADH dehydrogenase [ubiqu ( 154) 1049 265.0 3.4e-71


>>NP_002481 (OMIM: 602138) NADH dehydrogenase [ubiquinon  (154 aa)
 initn: 1049 init1: 1049 opt: 1049  Z-score: 1399.1  bits: 265.0 E(85289): 3.4e-71
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE0 MGKDIRPRSARAACKGVGLWSGCFGKMAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGKDIRPRSARAACKGVGLWSGCFGKMAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYRAWYREVPNTVHQFQLDITVKMGRDKVREMFMKNAHVTDPRVVDLLVIKGKIELEETI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LYRAWYREVPNTVHQFQLDITVKMGRDKVREMFMKNAHVTDPRVVDLLVIKGKIELEETI
               70        80        90       100       110       120

              130       140       150    
pF1KE0 KVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP
       ::::::::::::::::::::::::::::::::::
NP_002 KVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP
              130       140       150    




154 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:11:55 2016 done: Thu Nov  3 01:11:55 2016
 Total Scan time:  4.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]