FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0532, 154 aa
  1>>>pF1KE0532 154 - 154 aa - 154 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6809+/-0.000733; mu= 15.0778+/- 0.044
 mean_var=58.1174+/-11.397, 0's: 0 Z-trim(107.5): 11  B-trim: 0 in 0/51
 Lambda= 0.168237
 statistics sampled from 9609 (9613) to 9609 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.295), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS33656.1 NDUFA6 gene_id:4700|Hs108|chr22        ( 154) 1049 262.4 8.2e-71


>>CCDS33656.1 NDUFA6 gene_id:4700|Hs108|chr22             (154 aa)
 initn: 1049 init1: 1049 opt: 1049  Z-score: 1384.8  bits: 262.4 E(32554): 8.2e-71
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE0 MGKDIRPRSARAACKGVGLWSGCFGKMAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGKDIRPRSARAACKGVGLWSGCFGKMAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYRAWYREVPNTVHQFQLDITVKMGRDKVREMFMKNAHVTDPRVVDLLVIKGKIELEETI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LYRAWYREVPNTVHQFQLDITVKMGRDKVREMFMKNAHVTDPRVVDLLVIKGKIELEETI
               70        80        90       100       110       120

              130       140       150    
pF1KE0 KVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP
       ::::::::::::::::::::::::::::::::::
CCDS33 KVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP
              130       140       150    




154 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:11:54 2016 done: Thu Nov  3 01:11:54 2016
 Total Scan time:  1.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]