FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6116, 146 aa 1>>>pF1KE6116 146 - 146 aa - 146 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7351+/-0.00068; mu= 15.6487+/- 0.041 mean_var=73.8571+/-14.385, 0's: 0 Z-trim(111.2): 36 B-trim: 0 in 0/51 Lambda= 0.149238 statistics sampled from 12144 (12178) to 12144 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.374), width: 16 Scan time: 1.380 The best scores are: opt bits E(32554) CCDS33192.1 MCFD2 gene_id:90411|Hs108|chr2 ( 146) 988 220.9 2.2e-58 CCDS54355.1 MCFD2 gene_id:90411|Hs108|chr2 ( 127) 639 145.7 8.3e-36 CCDS54354.1 MCFD2 gene_id:90411|Hs108|chr2 ( 94) 623 142.1 7.3e-35 >>CCDS33192.1 MCFD2 gene_id:90411|Hs108|chr2 (146 aa) initn: 988 init1: 988 opt: 988 Z-score: 1161.6 bits: 220.9 E(32554): 2.2e-58 Smith-Waterman score: 988; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146) 10 20 30 40 50 60 pF1KE6 MTMRSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MTMRSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 NKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINI 70 80 90 100 110 120 130 140 pF1KE6 IDGVLRDDDKNNDGYIDYAEFAKSLQ :::::::::::::::::::::::::: CCDS33 IDGVLRDDDKNNDGYIDYAEFAKSLQ 130 140 >>CCDS54355.1 MCFD2 gene_id:90411|Hs108|chr2 (127 aa) initn: 639 init1: 639 opt: 639 Z-score: 756.3 bits: 145.7 E(32554): 8.3e-36 Smith-Waterman score: 639; 87.6% identity (92.0% similar) in 113 aa overlap (34-146:15-127) 10 20 30 40 50 60 pF1KE6 RSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKP :: : .... .::::::::::::: CCDS54 MLSVCSCRTSSGMRSQWPSARQRSSSLSTFRHIMEHLEGVINKP 10 20 30 40 70 80 90 100 110 120 pF1KE6 EAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDG 50 60 70 80 90 100 130 140 pF1KE6 VLRDDDKNNDGYIDYAEFAKSLQ ::::::::::::::::::::::: CCDS54 VLRDDDKNNDGYIDYAEFAKSLQ 110 120 >>CCDS54354.1 MCFD2 gene_id:90411|Hs108|chr2 (94 aa) initn: 623 init1: 623 opt: 623 Z-score: 739.3 bits: 142.1 E(32554): 7.3e-35 Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 94 aa overlap (53-146:1-94) 30 40 50 60 70 80 pF1KE6 GARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDY :::::::::::::::::::::::::::::: CCDS54 MEHLEGVINKPEAEMSPQELQLHYFKMHDY 10 20 30 90 100 110 120 130 140 pF1KE6 DGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 DGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFA 40 50 60 70 80 90 pF1KE6 KSLQ :::: CCDS54 KSLQ 146 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:35:06 2016 done: Tue Nov 8 09:35:07 2016 Total Scan time: 1.380 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]