FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1472, 305 aa 1>>>pF1KE1472 305 - 305 aa - 305 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1636+/-0.00111; mu= 16.3766+/- 0.066 mean_var=64.5689+/-13.571, 0's: 0 Z-trim(102.3): 46 B-trim: 486 in 1/45 Lambda= 0.159611 statistics sampled from 6865 (6894) to 6865 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.212), width: 16 Scan time: 1.830 The best scores are: opt bits E(32554) CCDS43125.1 CD47 gene_id:961|Hs108|chr3 ( 305) 1945 456.9 8.8e-129 CCDS43126.1 CD47 gene_id:961|Hs108|chr3 ( 323) 1931 453.7 8.7e-128 >>CCDS43125.1 CD47 gene_id:961|Hs108|chr3 (305 aa) initn: 1945 init1: 1945 opt: 1945 Z-score: 2425.5 bits: 456.9 E(32554): 8.8e-129 Smith-Waterman score: 1945; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305) 10 20 30 40 50 60 pF1KE1 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ 250 260 270 280 290 300 pF1KE1 PPRNN ::::: CCDS43 PPRNN >>CCDS43126.1 CD47 gene_id:961|Hs108|chr3 (323 aa) initn: 1931 init1: 1931 opt: 1931 Z-score: 2407.7 bits: 453.7 E(32554): 8.7e-128 Smith-Waterman score: 1931; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303) 10 20 30 40 50 60 pF1KE1 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MWPLVAALLLGSACCGSAQLLFNKTKSVEFTFCNDTVVIPCFVTNMEAQNTTEVYVKWKF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 REGETIIELKYRVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGGMDEKTIALL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 VAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIGLTSFVIA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 ILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLGLVYMKFVASNQKTIQ 250 260 270 280 290 300 pF1KE1 PPRNN ::: CCDS43 PPRKAVEEPLNAFKESKGMMNDE 310 320 305 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:45:16 2016 done: Sun Nov 6 23:45:17 2016 Total Scan time: 1.830 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]