FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5261, 202 aa 1>>>pF1KB5261 202 - 202 aa - 202 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0086+/-0.000271; mu= 16.5348+/- 0.017 mean_var=77.1483+/-15.888, 0's: 0 Z-trim(121.4): 15 B-trim: 2566 in 2/50 Lambda= 0.146020 statistics sampled from 38031 (38048) to 38031 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.446), width: 16 Scan time: 6.400 The best scores are: opt bits E(85289) NP_612141 (OMIM: 607587) interleukin-17D precursor ( 202) 1423 308.0 6.7e-84 XP_005266478 (OMIM: 607587) PREDICTED: interleukin ( 209) 1423 308.0 6.8e-84 XP_005266479 (OMIM: 607587) PREDICTED: interleukin ( 114) 745 165.0 4.3e-41 NP_037410 (OMIM: 604628) interleukin-17C precursor ( 197) 272 65.5 6.4e-11 NP_055258 (OMIM: 604627) interleukin-17B isoform 1 ( 180) 254 61.7 8.3e-10 XP_016864835 (OMIM: 604627) PREDICTED: interleukin ( 245) 255 62.0 9e-10 XP_011535924 (OMIM: 604627) PREDICTED: interleukin ( 128) 243 59.2 3.2e-09 XP_016864836 (OMIM: 604627) PREDICTED: interleukin ( 128) 243 59.2 3.2e-09 NP_001304916 (OMIM: 604627) interleukin-17B isofor ( 128) 243 59.2 3.2e-09 XP_016864837 (OMIM: 604627) PREDICTED: interleukin ( 128) 243 59.2 3.2e-09 NP_443104 (OMIM: 606496,613956) interleukin-17F pr ( 163) 216 53.6 2e-07 XP_011512578 (OMIM: 606496,613956) PREDICTED: inte ( 163) 216 53.6 2e-07 NP_002181 (OMIM: 603149) interleukin-17A precursor ( 155) 189 47.9 9.9e-06 NP_758525 (OMIM: 605658) interleukin-25 isoform 2 ( 161) 181 46.3 3.3e-05 NP_073626 (OMIM: 605658) interleukin-25 isoform 1 ( 177) 181 46.3 3.5e-05 >>NP_612141 (OMIM: 607587) interleukin-17D precursor [Ho (202 aa) initn: 1423 init1: 1423 opt: 1423 Z-score: 1627.3 bits: 308.0 E(85289): 6.7e-84 Smith-Waterman score: 1423; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202) 10 20 30 40 50 60 pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI 130 140 150 160 170 180 190 200 pF1KB5 NSSIDKQGAKLLLGPNDAPAGP :::::::::::::::::::::: NP_612 NSSIDKQGAKLLLGPNDAPAGP 190 200 >>XP_005266478 (OMIM: 607587) PREDICTED: interleukin-17D (209 aa) initn: 1423 init1: 1423 opt: 1423 Z-score: 1627.1 bits: 308.0 E(85289): 6.8e-84 Smith-Waterman score: 1423; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:8-209) 10 20 30 40 50 pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSA ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MLGALVWMLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB5 FHHTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FHHTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAY 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB5 CLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEP 130 140 150 160 170 180 180 190 200 pF1KB5 EKDADSINSSIDKQGAKLLLGPNDAPAGP ::::::::::::::::::::::::::::: XP_005 EKDADSINSSIDKQGAKLLLGPNDAPAGP 190 200 >>XP_005266479 (OMIM: 607587) PREDICTED: interleukin-17D (114 aa) initn: 758 init1: 745 opt: 745 Z-score: 858.7 bits: 165.0 E(85289): 4.3e-41 Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 106 aa overlap (97-202:9-114) 70 80 90 100 110 120 pF1KB5 RNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGE :::::::::::::::::::::::::::::: XP_005 MPPSYLLQRISYDPARYPRYLPEAYCLCRGCLTGLFGE 10 20 30 130 140 150 160 170 180 pF1KB5 EDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSINSSIDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSINSSIDK 40 50 60 70 80 90 190 200 pF1KB5 QGAKLLLGPNDAPAGP :::::::::::::::: XP_005 QGAKLLLGPNDAPAGP 100 110 >>NP_037410 (OMIM: 604628) interleukin-17C precursor [Ho (197 aa) initn: 285 init1: 203 opt: 272 Z-score: 317.0 bits: 65.5 E(85289): 6.4e-11 Smith-Waterman score: 272; 33.5% identity (60.5% similar) in 167 aa overlap (17-170:32-192) 10 20 30 40 pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQ--LYG :.:. : : : : .:: . .: NP_037 TLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQA--PPHLLARGAKWG 10 20 30 40 50 50 60 70 80 90 100 pF1KB5 R-LAAGVLSAFHHTLQLGPREQARNAS-CPAGGRPADRRFRPPTNLRSVSPWAYRISYDP . : ....:... . . : .:. .. ::. :: .. .. :. ::.::: ::.. : NP_037 QALPVALVSSLEAASHRGRHERPSATTQCPVL-RP-EEVLEADTHQRSISPWRYRVDTDE 60 70 80 90 100 110 110 120 130 140 150 pF1KB5 ARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPACA---------GGR :::. : : ::::::. . :.: . . :. . . .:::: : :. :. NP_037 DRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRP-CSRDGSGLPTPGAF 120 130 140 150 160 170 160 170 180 190 200 pF1KB5 SVYTEAYVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP . .:: .. .::::::: NP_037 AFHTE-FIHVPVGCTCVLPRSV 180 190 >>NP_055258 (OMIM: 604627) interleukin-17B isoform 1 pre (180 aa) initn: 275 init1: 205 opt: 254 Z-score: 297.0 bits: 61.7 E(85289): 8.3e-10 Smith-Waterman score: 254; 32.4% identity (56.1% similar) in 173 aa overlap (6-170:9-179) 10 20 30 40 50 pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRP----ARPRGCADRPEELLEQLYGRLAAGV-LS :::.. . : ::. . .:: : :... .: .:. . . NP_055 MDWPHNLLFLLTISIFLGLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARME 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB5 AFHHTLQLGPREQARNASCPAGGRPADRRFRP-PTNLRSVSPWAYRISYDPARYPRYLPE ...... : ::.: : : . .. .: ::.:::.: :..::.: : ::: NP_055 EYERNIEEMV-AQLRNSSELAQ-RKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPE 70 80 90 100 110 120 130 140 150 160 pF1KB5 AYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRT--PACAGGRSVYTEAYVTIPVGCTC : ::: ::.. . .:: . :.::. . : :: : : .. :: ::::: NP_055 ARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTC 120 130 140 150 160 170 170 180 190 200 pF1KB5 VPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP . NP_055 IF 180 >>XP_016864835 (OMIM: 604627) PREDICTED: interleukin-17B (245 aa) initn: 275 init1: 205 opt: 255 Z-score: 296.4 bits: 62.0 E(85289): 9e-10 Smith-Waterman score: 255; 32.6% identity (56.0% similar) in 175 aa overlap (4-170:72-244) 10 20 pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRP----ARPR : :::.. . : ::. . .:: XP_016 TVKLTCSHTVSESGDHPRRESAVSGRPGQSALFLLTISIFLGLGQPRSPKSKRKGQGRPG 50 60 70 80 90 100 30 40 50 60 70 80 pF1KB5 GCADRPEELLEQLYGRLAAGV-LSAFHHTLQLGPREQARNASCPAGGRPADRRFRP-PTN : :... .: .:. . . ...... : ::.: : : . .. .: XP_016 PLAPGPHQVPLDLVSRMKPYARMEEYERNIEEMV-AQLRNSSELAQ-RKCEVNLQLWMSN 110 120 130 140 150 90 100 110 120 130 140 pF1KB5 LRSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRT- ::.:::.: :..::.: : :::: ::: ::.. . .:: . :.::. . : :: XP_016 KRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLC 160 170 180 190 200 210 150 160 170 180 190 200 pF1KB5 -PACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP : : .. :: :::::. XP_016 PPPPRTGPCRQRAVMETIAVGCTCIF 220 230 240 >>XP_011535924 (OMIM: 604627) PREDICTED: interleukin-17B (128 aa) initn: 261 init1: 205 opt: 243 Z-score: 286.5 bits: 59.2 E(85289): 3.2e-09 Smith-Waterman score: 243; 43.7% identity (63.2% similar) in 87 aa overlap (86-170:41-127) 60 70 80 90 100 110 pF1KB5 HTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCL .: ::.:::.: :..::.: : :::: :: XP_011 ERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEARCL 20 30 40 50 60 70 120 130 140 150 160 170 pF1KB5 CRGCLTGLFGEEDVRFRSAPVYMPTVVLRRT--PACAGGRSVYTEAYVTIPVGCTCVPEP : ::.. . .:: . :.::. . : :: : : .. :: :::::. XP_011 CLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF 80 90 100 110 120 180 190 200 pF1KB5 EKDADSINSSIDKQGAKLLLGPNDAPAGP >>XP_016864836 (OMIM: 604627) PREDICTED: interleukin-17B (128 aa) initn: 261 init1: 205 opt: 243 Z-score: 286.5 bits: 59.2 E(85289): 3.2e-09 Smith-Waterman score: 243; 43.7% identity (63.2% similar) in 87 aa overlap (86-170:41-127) 60 70 80 90 100 110 pF1KB5 HTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCL .: ::.:::.: :..::.: : :::: :: XP_016 ERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEARCL 20 30 40 50 60 70 120 130 140 150 160 170 pF1KB5 CRGCLTGLFGEEDVRFRSAPVYMPTVVLRRT--PACAGGRSVYTEAYVTIPVGCTCVPEP : ::.. . .:: . :.::. . : :: : : .. :: :::::. XP_016 CLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF 80 90 100 110 120 180 190 200 pF1KB5 EKDADSINSSIDKQGAKLLLGPNDAPAGP >>NP_001304916 (OMIM: 604627) interleukin-17B isoform 2 (128 aa) initn: 261 init1: 205 opt: 243 Z-score: 286.5 bits: 59.2 E(85289): 3.2e-09 Smith-Waterman score: 243; 43.7% identity (63.2% similar) in 87 aa overlap (86-170:41-127) 60 70 80 90 100 110 pF1KB5 HTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCL .: ::.:::.: :..::.: : :::: :: NP_001 ERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEARCL 20 30 40 50 60 70 120 130 140 150 160 170 pF1KB5 CRGCLTGLFGEEDVRFRSAPVYMPTVVLRRT--PACAGGRSVYTEAYVTIPVGCTCVPEP : ::.. . .:: . :.::. . : :: : : .. :: :::::. NP_001 CLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF 80 90 100 110 120 180 190 200 pF1KB5 EKDADSINSSIDKQGAKLLLGPNDAPAGP >>XP_016864837 (OMIM: 604627) PREDICTED: interleukin-17B (128 aa) initn: 261 init1: 205 opt: 243 Z-score: 286.5 bits: 59.2 E(85289): 3.2e-09 Smith-Waterman score: 243; 43.7% identity (63.2% similar) in 87 aa overlap (86-170:41-127) 60 70 80 90 100 110 pF1KB5 HTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCL .: ::.:::.: :..::.: : :::: :: XP_016 ERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEARCL 20 30 40 50 60 70 120 130 140 150 160 170 pF1KB5 CRGCLTGLFGEEDVRFRSAPVYMPTVVLRRT--PACAGGRSVYTEAYVTIPVGCTCVPEP : ::.. . .:: . :.::. . : :: : : .. :: :::::. XP_016 CLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF 80 90 100 110 120 180 190 200 pF1KB5 EKDADSINSSIDKQGAKLLLGPNDAPAGP 202 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:47:11 2016 done: Sun Nov 6 23:47:12 2016 Total Scan time: 6.400 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]