FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5261, 202 aa 1>>>pF1KB5261 202 - 202 aa - 202 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0991+/-0.000584; mu= 16.2460+/- 0.035 mean_var=80.3922+/-16.267, 0's: 0 Z-trim(114.5): 11 B-trim: 724 in 1/50 Lambda= 0.143043 statistics sampled from 15050 (15060) to 15050 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.463), width: 16 Scan time: 2.090 The best scores are: opt bits E(32554) CCDS9292.1 IL17D gene_id:53342|Hs108|chr13 ( 202) 1423 302.0 1.6e-82 CCDS42217.1 IL17C gene_id:27189|Hs108|chr16 ( 197) 272 64.4 5.2e-11 >>CCDS9292.1 IL17D gene_id:53342|Hs108|chr13 (202 aa) initn: 1423 init1: 1423 opt: 1423 Z-score: 1594.8 bits: 302.0 E(32554): 1.6e-82 Smith-Waterman score: 1423; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202) 10 20 30 40 50 60 pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI 130 140 150 160 170 180 190 200 pF1KB5 NSSIDKQGAKLLLGPNDAPAGP :::::::::::::::::::::: CCDS92 NSSIDKQGAKLLLGPNDAPAGP 190 200 >>CCDS42217.1 IL17C gene_id:27189|Hs108|chr16 (197 aa) initn: 285 init1: 203 opt: 272 Z-score: 311.2 bits: 64.4 E(32554): 5.2e-11 Smith-Waterman score: 272; 33.5% identity (60.5% similar) in 167 aa overlap (17-170:32-192) 10 20 30 40 pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQ--LYG :.:. : : : : .:: . .: CCDS42 TLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQA--PPHLLARGAKWG 10 20 30 40 50 50 60 70 80 90 100 pF1KB5 R-LAAGVLSAFHHTLQLGPREQARNAS-CPAGGRPADRRFRPPTNLRSVSPWAYRISYDP . : ....:... . . : .:. .. ::. :: .. .. :. ::.::: ::.. : CCDS42 QALPVALVSSLEAASHRGRHERPSATTQCPVL-RP-EEVLEADTHQRSISPWRYRVDTDE 60 70 80 90 100 110 110 120 130 140 150 pF1KB5 ARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPACA---------GGR :::. : : ::::::. . :.: . . :. . . .:::: : :. :. CCDS42 DRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRP-CSRDGSGLPTPGAF 120 130 140 150 160 170 160 170 180 190 200 pF1KB5 SVYTEAYVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP . .:: .. .::::::: CCDS42 AFHTE-FIHVPVGCTCVLPRSV 180 190 202 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:47:10 2016 done: Sun Nov 6 23:47:11 2016 Total Scan time: 2.090 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]