FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1477, 351 aa 1>>>pF1KE1477 351 - 351 aa - 351 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.8581+/-0.000388; mu= -5.2800+/- 0.024 mean_var=407.3288+/-83.338, 0's: 0 Z-trim(124.7): 2 B-trim: 871 in 1/61 Lambda= 0.063548 statistics sampled from 46984 (46989) to 46984 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.551), width: 16 Scan time: 9.650 The best scores are: opt bits E(85289) NP_001758 (OMIM: 186990) T-cell surface antigen CD ( 351) 2380 231.5 2.2e-60 NP_001315538 (OMIM: 186990) T-cell surface antigen ( 377) 1360 138.0 3.3e-32 >>NP_001758 (OMIM: 186990) T-cell surface antigen CD2 is (351 aa) initn: 2380 init1: 2380 opt: 2380 Z-score: 1205.0 bits: 231.5 E(85289): 2.2e-60 Smith-Waterman score: 2380; 99.7% identity (100.0% similar) in 351 aa overlap (1-351:1-351) 10 20 30 40 50 60 pF1KE1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RSRRNDEELETRAHRVATEERGRKPQQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: NP_001 RSRRNDEELETRAHRVATEERGRKPHQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN 310 320 330 340 350 >>NP_001315538 (OMIM: 186990) T-cell surface antigen CD2 (377 aa) initn: 2366 init1: 1343 opt: 1360 Z-score: 699.2 bits: 138.0 E(85289): 3.3e-32 Smith-Waterman score: 2318; 92.8% identity (93.1% similar) in 377 aa overlap (1-351:1-377) 10 20 30 40 50 60 pF1KE1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL 130 140 150 160 170 180 190 200 210 pF1KE1 SAKFKCTAGNKVSKESSVEPVSCP--------------------------EKGLDIYLII :::::::::::::::::::::::: :::::::::: NP_001 SAKFKCTAGNKVSKESSVEPVSCPGGSILGQSNGLSAWTPPSHPTSLPFAEKGLDIYLII 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE1 GICGGGSLLMVFVALLVFYITKRKKQRSRRNDEELETRAHRVATEERGRKPQQIPASTPQ :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: NP_001 GICGGGSLLMVFVALLVFYITKRKKQRSRRNDEELETRAHRVATEERGRKPHQIPASTPQ 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE1 NPATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NPATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQ 310 320 330 340 350 360 340 350 pF1KE1 PKPPHGAAENSLSPSSN ::::::::::::::::: NP_001 PKPPHGAAENSLSPSSN 370 351 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:00:39 2016 done: Mon Nov 7 00:00:40 2016 Total Scan time: 9.650 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]