FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1477, 351 aa 1>>>pF1KE1477 351 - 351 aa - 351 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4457+/-0.000973; mu= -2.7277+/- 0.059 mean_var=375.9691+/-74.903, 0's: 0 Z-trim(116.8): 6 B-trim: 81 in 1/54 Lambda= 0.066145 statistics sampled from 17443 (17448) to 17443 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.536), width: 16 Scan time: 3.340 The best scores are: opt bits E(32554) CCDS889.1 CD2 gene_id:914|Hs108|chr1 ( 351) 2380 240.2 2e-63 >>CCDS889.1 CD2 gene_id:914|Hs108|chr1 (351 aa) initn: 2380 init1: 2380 opt: 2380 Z-score: 1252.1 bits: 240.2 E(32554): 2e-63 Smith-Waterman score: 2380; 99.7% identity (100.0% similar) in 351 aa overlap (1-351:1-351) 10 20 30 40 50 60 pF1KE1 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 MSFPCKFVASFLLIFNVSSKGAVSKEITNALETWGALGQDINLDIPSFQMSDDIDDIKWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 IFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 SAKFKCTAGNKVSKESSVEPVSCPEKGLDIYLIIGICGGGSLLMVFVALLVFYITKRKKQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RSRRNDEELETRAHRVATEERGRKPQQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: CCDS88 RSRRNDEELETRAHRVATEERGRKPHQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPP 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 GHRVQHQPQKRPPAPSGTQVHQQKGPPLPRPRVQPKPPHGAAENSLSPSSN 310 320 330 340 350 351 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:00:38 2016 done: Mon Nov 7 00:00:38 2016 Total Scan time: 3.340 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]