Result of FASTA (omim) for pFN21AE3586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3586, 205 aa
  1>>>pF1KE3586 205 - 205 aa - 205 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2608+/-0.000313; mu= 13.9040+/- 0.019
 mean_var=64.5085+/-13.390, 0's: 0 Z-trim(116.2): 20  B-trim: 76 in 1/50
 Lambda= 0.159686
 statistics sampled from 27239 (27259) to 27239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.32), width:  16
 Scan time:  6.040

The best scores are:                                      opt bits E(85289)
NP_004419 (OMIM: 191164) ephrin-A1 isoform a precu ( 205) 1420 335.3 4.1e-92
NP_872626 (OMIM: 191164) ephrin-A1 isoform b precu ( 183)  941 224.9 6.2e-59
XP_006714628 (OMIM: 601535) PREDICTED: ephrin-A5 i ( 201)  509 125.4 6.1e-29
NP_001953 (OMIM: 601535) ephrin-A5 precursor [Homo ( 228)  503 124.1 1.8e-28
NP_004943 (OMIM: 601381) ephrin-A3 precursor [Homo ( 238)  502 123.9 2.1e-28
NP_001396 (OMIM: 602756) ephrin-A2 precursor [Homo ( 213)  457 113.5 2.6e-25
NP_005218 (OMIM: 601380) ephrin-A4 isoform a precu ( 201)  435 108.4 8.2e-24
NP_872632 (OMIM: 601380) ephrin-A4 isoform c precu ( 193)  434 108.2 9.4e-24
NP_872631 (OMIM: 601380) ephrin-A4 isoform b precu ( 207)  421 105.2 7.9e-23
XP_011541552 (OMIM: 601535) PREDICTED: ephrin-A5 i ( 210)  413 103.3 2.9e-22
XP_016881939 (OMIM: 602756) PREDICTED: ephrin-A2 i ( 202)  394 98.9 5.8e-21
XP_016881938 (OMIM: 602756) PREDICTED: ephrin-A2 i ( 298)  394 99.0   8e-21
XP_016864694 (OMIM: 601535) PREDICTED: ephrin-A5 i ( 148)  268 69.8 2.4e-12
XP_011541553 (OMIM: 601535) PREDICTED: ephrin-A5 i ( 148)  268 69.8 2.4e-12
NP_004420 (OMIM: 300035,304110) ephrin-B1 precurso ( 346)  244 64.5 2.3e-10
NP_004084 (OMIM: 600527) ephrin-B2 precursor [Homo ( 333)  233 62.0 1.3e-09
NP_001397 (OMIM: 602297) ephrin-B3 precursor [Homo ( 340)  232 61.7 1.5e-09
XP_016875895 (OMIM: 600527) PREDICTED: ephrin-B2 i ( 335)  178 49.3 8.4e-06


>>NP_004419 (OMIM: 191164) ephrin-A1 isoform a precursor  (205 aa)
 initn: 1420 init1: 1420 opt: 1420  Z-score: 1774.7  bits: 335.3 E(85289): 4.1e-92
Smith-Waterman score: 1420; 99.0% identity (99.5% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPEVRVLHSIA
       :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::.
NP_004 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIG
              130       140       150       160       170       180

              190       200     
pF1KE3 HSAAPRLFPLAWTVLLLPLLLLQTP
       :::::::::::::::::::::::::
NP_004 HSAAPRLFPLAWTVLLLPLLLLQTP
              190       200     

>>NP_872626 (OMIM: 191164) ephrin-A1 isoform b precursor  (183 aa)
 initn: 939 init1: 939 opt: 941  Z-score: 1179.1  bits: 224.9 E(85289): 6.2e-59
Smith-Waterman score: 1217; 88.3% identity (88.8% similar) in 205 aa overlap (1-205:1-183)

               10        20        30        40        50        60
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPEVRVLHSIA
       ::::::::::                      :::::: ::::::::::::::::::::.
NP_872 KEGHSYYYIS----------------------HSPQAHDNPQEKRLAADDPEVRVLHSIG
              130                             140       150        

              190       200     
pF1KE3 HSAAPRLFPLAWTVLLLPLLLLQTP
       :::::::::::::::::::::::::
NP_872 HSAAPRLFPLAWTVLLLPLLLLQTP
      160       170       180   

>>XP_006714628 (OMIM: 601535) PREDICTED: ephrin-A5 isofo  (201 aa)
 initn: 311 init1: 277 opt: 509  Z-score: 640.6  bits: 125.4 E(85289): 6.1e-29
Smith-Waterman score: 509; 47.8% identity (73.3% similar) in 161 aa overlap (14-173:25-183)

                          10        20        30        40         
pF1KE3            MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDI
                               : :.:::..:.::::::.:.  :: : : .:::.:.
XP_006 MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDV
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KE3 ICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQ
       .:::::: :: .   :.:.::.:. . :. :.  ::   ::.:::: . .:: :.:::::
XP_006 FCPHYED-SVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQ
                70        80        90       100       110         

     110       120       130        140       150       160        
pF1KE3 RFTPFTLGKEFKEGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAHVNPQEKRLAA
        ::::.:: ::. :. :.:::. : ..  : ::.::: :    . . .  ..:.. . ::
XP_006 LFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVR-PTNDTVHESAEPSRGENAA
     120       130       140       150        160       170        

      170       180       190       200     
pF1KE3 DDPEVRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
       . :..                                
XP_006 QTPRIPSRLLAILLFLLAMLLTL              
      180       190       200               

>>NP_001953 (OMIM: 601535) ephrin-A5 precursor [Homo sap  (228 aa)
 initn: 504 init1: 275 opt: 503  Z-score: 632.3  bits: 124.1 E(85289): 1.8e-28
Smith-Waterman score: 503; 48.1% identity (74.1% similar) in 158 aa overlap (14-170:25-179)

                          10        20        30        40         
pF1KE3            MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDI
                               : :.:::..:.::::::.:.  :: : : .:::.:.
NP_001 MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDV
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KE3 ICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQ
       .:::::: :: .   :.:.::.:. . :. :.  ::   ::.:::: . .:: :.:::::
NP_001 FCPHYED-SVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQ
                70        80        90       100       110         

     110       120       130        140       150       160        
pF1KE3 RFTPFTLGKEFKEGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAHVNPQEKRLAA
        ::::.:: ::. :. :.:::. : ..  : ::.::: :  . :.: .  .. ... . .
NP_001 LFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFV--RPTNSCMKTIGVHDRVFDV
     120       130       140       150         160       170       

      170       180       190       200                   
pF1KE3 DDPEVRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP              
       .:                                                 
NP_001 NDKVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL
       180       190       200       210       220        

>>NP_004943 (OMIM: 601381) ephrin-A3 precursor [Homo sap  (238 aa)
 initn: 503 init1: 271 opt: 502  Z-score: 630.8  bits: 123.9 E(85289): 2.1e-28
Smith-Waterman score: 510; 39.4% identity (66.5% similar) in 221 aa overlap (7-204:19-238)

                           10        20        30        40        
pF1KE3             MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVD
                         :::.   . : ..::.:.::::: ..: : ::..:..:::.:
NP_004 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
               10        20        30        40        50        60

       50        60               70        80        90       100 
pF1KE3 IICPHYEDHSVADAA-------MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGP
       : ::::.. .:. .:        :::.::.: .. :. :.  :.   ::.:::: : :.:
NP_004 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSP
               70        80        90       100        110         

             110       120       130       140        150          
pF1KE3 EKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVS-GKITHS------
        :.::::::.. :.:: ::. :: ::::: : :. . .:::.:: :  .. .::      
NP_004 IKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVP
     120       130       140       150       160       170         

            160            170       180         190       200     
pF1KE3 --PQAHVNPQEK-----RLAADDPEVRVLHSIAHSAAPRL--FPLAWTVLLLPLLLLQTP
         ::  ..:. :      . ...:.:  :..   ...:.   .:::  . .. . .: . 
NP_004 TLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS 
     180       190       200       210       220       230         

>>NP_001396 (OMIM: 602756) ephrin-A2 precursor [Homo sap  (213 aa)
 initn: 470 init1: 362 opt: 457  Z-score: 575.5  bits: 113.5 E(85289): 2.6e-25
Smith-Waterman score: 467; 42.7% identity (62.5% similar) in 192 aa overlap (16-195:32-211)

                              10        20        30               
pF1KE3                MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFR---NED---YTI
                                     : .::..:.:: :::.:.   ..:   ::.
NP_001 APAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTV
              10        20        30        40        50        60 

      40        50        60        70        80        90         
pF1KE3 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKH
       .:..:::.:: ::::         ::.:.::.:. : .  :. ...   ::.::::.:  
NP_001 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPG
              70        80        90       100       110       120 

     100       110       120       130        140       150        
pF1KE3 GPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAH
       :: :.::::: ::::.:: ::. :: :::::    .  :: ::::::            .
NP_001 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKV------------Y
             130       140       150       160                     

      160        170       180           190       200     
pF1KE3 VNPQEKRL-AADDPEVRVLHSIAHSAAPRLF----PLAWTVLLLPLLLLQTP
       : : .. :  : .:     .: .  .. :::    :. ::.:          
NP_001 VRPTNETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS        
     170       180       190       200       210           

>>NP_005218 (OMIM: 601380) ephrin-A4 isoform a precursor  (201 aa)
 initn: 427 init1: 196 opt: 435  Z-score: 548.4  bits: 108.4 E(85289): 8.2e-24
Smith-Waterman score: 435; 43.6% identity (67.3% similar) in 156 aa overlap (4-158:11-162)

                      10        20        30        40        50   
pF1KE3        MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
                 ::: .::     ... ::.:.::::::..   : .... ::::.::.:::
NP_005 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
               10        20        30        40        50        60

            60        70        80         90       100       110  
pF1KE3 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
       ::  .  ..  : . ::.:.   :. :: .. .   :: :. :    :  ..:::.::::
NP_005 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
               70         80        90       100          110      

            120       130       140       150       160       170  
pF1KE3 PFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPE
       ::.:: ::  :..::::: :  .   .::::.:.:  :  .: .::              
NP_005 PFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWR
        120       130       140       150       160       170      

            180       190       200     
pF1KE3 VRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
                                        
NP_005 GGDTPSPLCLLLLLLLLILRLLRIL        
        180       190       200         

>>NP_872632 (OMIM: 601380) ephrin-A4 isoform c precursor  (193 aa)
 initn: 389 init1: 196 opt: 434  Z-score: 547.5  bits: 108.2 E(85289): 9.4e-24
Smith-Waterman score: 434; 42.0% identity (66.9% similar) in 169 aa overlap (4-171:11-171)

                      10        20        30        40        50   
pF1KE3        MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
                 ::: .::     ... ::.:.::::::..   : .... ::::.::.:::
NP_872 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
               10        20        30        40        50        60

            60        70        80         90       100       110  
pF1KE3 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
       ::  .  ..  : . ::.:.   :. :: .. .   :: :. :    :  ..:::.::::
NP_872 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
               70         80        90       100          110      

            120       130       140       150       160       170  
pF1KE3 PFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPE
       ::.:: ::  :..::::: :  .   .::::.:.:  :  . : .:  :.: . ...:: 
NP_872 PFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLP-SH--PKEPE-SSQDPL
        120       130       140       150        160          170  

            180       190       200     
pF1KE3 VRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
                                        
NP_872 EEEGSLLPALGVPIQTDKMEH            
            180       190               

>>NP_872631 (OMIM: 601380) ephrin-A4 isoform b precursor  (207 aa)
 initn: 389 init1: 196 opt: 421  Z-score: 530.8  bits: 105.2 E(85289): 7.9e-23
Smith-Waterman score: 421; 43.9% identity (67.6% similar) in 148 aa overlap (4-150:11-154)

                      10        20        30        40        50   
pF1KE3        MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
                 ::: .::     ... ::.:.::::::..   : .... ::::.::.:::
NP_872 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
               10        20        30        40        50        60

            60        70        80         90       100       110  
pF1KE3 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
       ::  .  ..  : . ::.:.   :. :: .. .   :: :. :    :  ..:::.::::
NP_872 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
               70         80        90       100          110      

            120       130       140       150       160       170  
pF1KE3 PFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPE
       ::.:: ::  :..::::: :  .   .::::.:.:  :                      
NP_872 PFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRSPGGGGIPAACTG
        120       130       140       150       160       170      

            180       190       200     
pF1KE3 VRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
                                        
NP_872 GANSDRQDGALMGEIRGSEVTLAGACPLITG  
        180       190       200         

>>XP_011541552 (OMIM: 601535) PREDICTED: ephrin-A5 isofo  (210 aa)
 initn: 414 init1: 275 opt: 413  Z-score: 520.8  bits: 103.3 E(85289): 2.9e-22
Smith-Waterman score: 413; 45.7% identity (71.4% similar) in 140 aa overlap (32-170:25-161)

              10        20        30        40        50        60 
pF1KE3 EFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVAD
                                     :.  :: : : .:::.:..:::::: :: .
XP_011       MQTLEPACFRFSLHTNTNKQCTLGFQRGDYHIDVCINDYLDVFCPHYED-SVPE
                     10        20        30        40         50   

              70        80        90       100       110       120 
pF1KE3 AAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFK
          :.:.::.:. . :. :.  ::   ::.:::: . .:: :.::::: ::::.:: ::.
XP_011 DKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFR
            60        70        80        90       100       110   

             130        140       150       160       170       180
pF1KE3 EGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAHVNPQEKRLAADDPEVRVLHSIA
        :. :.:::. : ..  : ::.::: :  . :.: .  .. ... . ..:          
XP_011 PGREYFYISSAIPDNGRRSCLKLKVFV--RPTNSCMKTIGVHDRVFDVNDKVENSLEPAD
           120       130       140         150       160       170 

              190       200                   
pF1KE3 HSAAPRLFPLAWTVLLLPLLLLQTP              
                                              
XP_011 DTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL
             180       190       200       210




205 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:57:03 2016 done: Sun Nov  6 01:57:04 2016
 Total Scan time:  6.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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