FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1438, 295 aa 1>>>pF1KE1438 295 - 295 aa - 295 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1502+/-0.000333; mu= 15.9325+/- 0.021 mean_var=58.3289+/-12.038, 0's: 0 Z-trim(113.5): 24 B-trim: 0 in 0/50 Lambda= 0.167932 statistics sampled from 22884 (22899) to 22884 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.268), width: 16 Scan time: 6.240 The best scores are: opt bits E(85289) NP_061833 (OMIM: 606628,606664) glycine N-methyltr ( 295) 2018 497.1 1.7e-140 NP_001305794 (OMIM: 606628,606664) glycine N-methy ( 276) 1038 259.7 4.8e-69 >>NP_061833 (OMIM: 606628,606664) glycine N-methyltransf (295 aa) initn: 2018 init1: 2018 opt: 2018 Z-score: 2643.3 bits: 497.1 E(85289): 1.7e-140 Smith-Waterman score: 2018; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295) 10 20 30 40 50 60 pF1KE1 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD 250 260 270 280 290 >>NP_001305794 (OMIM: 606628,606664) glycine N-methyltra (276 aa) initn: 1038 init1: 1038 opt: 1038 Z-score: 1360.6 bits: 259.7 E(85289): 4.8e-69 Smith-Waterman score: 1852; 93.6% identity (93.6% similar) in 295 aa overlap (1-295:1-276) 10 20 30 40 50 60 pF1KE1 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY ::::::::::::::::::::::::::::::: :::::::::: NP_001 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKG-------------------GLLVIDHRNY 130 140 150 160 190 200 210 220 230 240 pF1KE1 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK 170 180 190 200 210 220 250 260 270 280 290 pF1KE1 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD 230 240 250 260 270 295 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:04:24 2016 done: Mon Nov 7 00:04:25 2016 Total Scan time: 6.240 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]