Result of FASTA (omim) for pFN21AE1042
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1042, 501 aa
  1>>>pF1KE1042 501 - 501 aa - 501 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7393+/-0.000511; mu= 8.6891+/- 0.031
 mean_var=296.6755+/-71.353, 0's: 0 Z-trim(116.0): 42  B-trim: 0 in 0/54
 Lambda= 0.074462
 statistics sampled from 26759 (26799) to 26759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.314), width:  16
 Scan time: 10.200

The best scores are:                                      opt bits E(85289)
XP_011517279 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 3465 386.6 9.2e-107
XP_011517280 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 3465 386.6 9.2e-107
XP_011517278 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 3465 386.6 9.2e-107
NP_066961 (OMIM: 601895) TNF receptor-associated f ( 501) 3465 386.6 9.2e-107
XP_016870584 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 3465 386.6 9.2e-107
XP_011517276 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 3465 386.6 9.2e-107
XP_011517277 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 3465 386.6 9.2e-107
XP_016870583 (OMIM: 601895) PREDICTED: TNF recepto ( 533) 3465 386.6 9.5e-107
XP_011517275 (OMIM: 601895) PREDICTED: TNF recepto ( 556) 3465 386.6 9.7e-107
XP_011535418 (OMIM: 601896,614849) PREDICTED: TNF  ( 516)  952 116.6 1.7e-25
NP_005649 (OMIM: 601711) TNF receptor-associated f ( 416)  879 108.7 3.5e-23
NP_001177874 (OMIM: 601711) TNF receptor-associate ( 416)  879 108.7 3.5e-23
NP_001177876 (OMIM: 601711) TNF receptor-associate ( 294)  871 107.6 5.2e-23
XP_011535419 (OMIM: 601896,614849) PREDICTED: TNF  ( 512)  838 104.4 8.3e-22
NP_001186356 (OMIM: 601896,614849) TNF receptor-as ( 485)  776 97.7 8.2e-20
XP_011535420 (OMIM: 601896,614849) PREDICTED: TNF  ( 485)  776 97.7 8.2e-20
XP_016877108 (OMIM: 601896,614849) PREDICTED: TNF  ( 543)  766 96.7 1.8e-19
NP_663778 (OMIM: 601896,614849) TNF receptor-assoc ( 543)  766 96.7 1.8e-19
NP_663777 (OMIM: 601896,614849) TNF receptor-assoc ( 568)  729 92.7   3e-18
XP_016877106 (OMIM: 601896,614849) PREDICTED: TNF  ( 568)  729 92.7   3e-18
XP_016877107 (OMIM: 601896,614849) PREDICTED: TNF  ( 568)  729 92.7   3e-18
NP_003291 (OMIM: 601896,614849) TNF receptor-assoc ( 568)  729 92.7   3e-18
XP_016857710 (OMIM: 602356) PREDICTED: TNF recepto ( 557)  707 90.4 1.5e-17
NP_001029082 (OMIM: 602356) TNF receptor-associate ( 557)  707 90.4 1.5e-17
NP_665702 (OMIM: 602356) TNF receptor-associated f ( 557)  707 90.4 1.5e-17
NP_004610 (OMIM: 602356) TNF receptor-associated f ( 557)  707 90.4 1.5e-17
XP_011508261 (OMIM: 602356) PREDICTED: TNF recepto ( 568)  689 88.4 5.8e-17
XP_011508262 (OMIM: 602356) PREDICTED: TNF recepto ( 568)  689 88.4 5.8e-17
NP_001306136 (OMIM: 602356) TNF receptor-associate ( 568)  689 88.4 5.8e-17
XP_011508259 (OMIM: 602356) PREDICTED: TNF recepto ( 631)  689 88.5 6.2e-17
XP_011523808 (OMIM: 602464) PREDICTED: TNF recepto ( 454)  416 59.0 3.4e-08
XP_011523807 (OMIM: 602464) PREDICTED: TNF recepto ( 461)  416 59.0 3.5e-08
NP_004286 (OMIM: 602464) TNF receptor-associated f ( 470)  416 59.0 3.5e-08
XP_011523806 (OMIM: 602464) PREDICTED: TNF recepto ( 477)  416 59.0 3.5e-08
XP_011523810 (OMIM: 602464) PREDICTED: TNF recepto ( 352)  405 57.6 6.7e-08
XP_011523809 (OMIM: 602464) PREDICTED: TNF recepto ( 352)  405 57.6 6.7e-08
NP_004611 (OMIM: 602355) TNF receptor-associated f ( 522)  399 57.2 1.3e-07
NP_665802 (OMIM: 602355) TNF receptor-associated f ( 522)  399 57.2 1.3e-07
XP_016877109 (OMIM: 601896,614849) PREDICTED: TNF  ( 292)  340 50.5 7.7e-06


>>XP_011517279 (OMIM: 601895) PREDICTED: TNF receptor-as  (501 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.7  bits: 386.6 E(85289): 9.2e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE1 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
              430       440       450       460       470       480

              490       500 
pF1KE1 KNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::
XP_011 KNSYVRDDAIFIKAIVDLTGL
              490       500 

>>XP_011517280 (OMIM: 601895) PREDICTED: TNF receptor-as  (501 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.7  bits: 386.6 E(85289): 9.2e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE1 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
              430       440       450       460       470       480

              490       500 
pF1KE1 KNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::
XP_011 KNSYVRDDAIFIKAIVDLTGL
              490       500 

>>XP_011517278 (OMIM: 601895) PREDICTED: TNF receptor-as  (501 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.7  bits: 386.6 E(85289): 9.2e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE1 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
              430       440       450       460       470       480

              490       500 
pF1KE1 KNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::
XP_011 KNSYVRDDAIFIKAIVDLTGL
              490       500 

>>NP_066961 (OMIM: 601895) TNF receptor-associated facto  (501 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.7  bits: 386.6 E(85289): 9.2e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE1 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
              430       440       450       460       470       480

              490       500 
pF1KE1 KNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::
NP_066 KNSYVRDDAIFIKAIVDLTGL
              490       500 

>>XP_016870584 (OMIM: 601895) PREDICTED: TNF receptor-as  (501 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.7  bits: 386.6 E(85289): 9.2e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE1 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
              430       440       450       460       470       480

              490       500 
pF1KE1 KNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::
XP_016 KNSYVRDDAIFIKAIVDLTGL
              490       500 

>>XP_011517276 (OMIM: 601895) PREDICTED: TNF receptor-as  (501 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.7  bits: 386.6 E(85289): 9.2e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE1 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
              430       440       450       460       470       480

              490       500 
pF1KE1 KNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::
XP_011 KNSYVRDDAIFIKAIVDLTGL
              490       500 

>>XP_011517277 (OMIM: 601895) PREDICTED: TNF receptor-as  (501 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.7  bits: 386.6 E(85289): 9.2e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE1 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA
              430       440       450       460       470       480

              490       500 
pF1KE1 KNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::
XP_011 KNSYVRDDAIFIKAIVDLTGL
              490       500 

>>XP_016870583 (OMIM: 601895) PREDICTED: TNF receptor-as  (533 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.5  bits: 386.6 E(85289): 9.5e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:33-533)

                                             10        20        30
pF1KE1                               MAAASVTPPGSLELLQPGFSKTLLGTKLEA
                                     ::::::::::::::::::::::::::::::
XP_016 LEGLQGSLKLCDSASLSLDRRALFAGVTALMAAASVTPPGSLELLQPGFSKTLLGTKLEA
             10        20        30        40        50        60  

               40        50        60        70        80        90
pF1KE1 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSA
             70        80        90       100       110       120  

              100       110       120       130       140       150
pF1KE1 FPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKER
            130       140       150       160       170       180  

              160       170       180       190       200       210
pF1KE1 HLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCG
            190       200       210       220       230       240  

              220       230       240       250       260       270
pF1KE1 KCRVPCRFHAIGCLETVEGEKQQEHEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KCRVPCRFHAIGCLETVEGEKQQEHEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQ
            250       260       270       280       290       300  

              280       290       300       310       320       330
pF1KE1 RCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGL
            310       320       330       340       350       360  

              340       350       360       370       380       390
pF1KE1 KDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM
            370       380       390       400       410       420  

              400       410       420       430       440       450
pF1KE1 CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD
            430       440       450       460       470       480  

              460       470       480       490       500 
pF1KE1 VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL
            490       500       510       520       530   

>>XP_011517275 (OMIM: 601895) PREDICTED: TNF receptor-as  (556 aa)
 initn: 3465 init1: 3465 opt: 3465  Z-score: 2037.3  bits: 386.6 E(85289): 9.7e-107
Smith-Waterman score: 3465; 100.0% identity (100.0% similar) in 501 aa overlap (1-501:56-556)

                                             10        20        30
pF1KE1                               MAAASVTPPGSLELLQPGFSKTLLGTKLEA
                                     ::::::::::::::::::::::::::::::
XP_011 WESPELRHGQSESPLSSQQTRALFAGVTALMAAASVTPPGSLELLQPGFSKTLLGTKLEA
          30        40        50        60        70        80     

               40        50        60        70        80        90
pF1KE1 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSA
          90       100       110       120       130       140     

              100       110       120       130       140       150
pF1KE1 FPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKER
         150       160       170       180       190       200     

              160       170       180       190       200       210
pF1KE1 HLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCG
         210       220       230       240       250       260     

              220       230       240       250       260       270
pF1KE1 KCRVPCRFHAIGCLETVEGEKQQEHEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KCRVPCRFHAIGCLETVEGEKQQEHEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQ
         270       280       290       300       310       320     

              280       290       300       310       320       330
pF1KE1 RCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGL
         330       340       350       360       370       380     

              340       350       360       370       380       390
pF1KE1 KDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM
         390       400       410       420       430       440     

              400       410       420       430       440       450
pF1KE1 CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD
         450       460       470       480       490       500     

              460       470       480       490       500 
pF1KE1 VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL
         510       520       530       540       550      

>>XP_011535418 (OMIM: 601896,614849) PREDICTED: TNF rece  (516 aa)
 initn: 840 init1: 495 opt: 952  Z-score: 578.6  bits: 116.6 E(85289): 1.7e-25
Smith-Waterman score: 989; 35.1% identity (62.5% similar) in 502 aa overlap (16-501:36-513)

                              10        20        30        40     
pF1KE1                MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPF
                                     : :... .. : .: :: :  :. ::  : 
XP_011 KMDSPGALQTNPPLKLHTDRSAGTPVFVPEQGGYKEKFVKT-VEDKYKCEKCHLVLCSPK
          10        20        30        40         50        60    

          50        60        70        80        90       100     
pF1KE1 QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA
       :..::::.:  :.:..:::.  .:.:: .:.: .. .        : ::  .::. .:  
XP_011 QTECGHRFCESCMAALLSSSSPKCTAC-QESIVKDKV--------FKDNCCKREILALQI
           70        80        90        100               110     

           110       120       130         140       150       160 
pF1KE1 VC--PSDGCTWKGTLKEYESCHEGRCPLMLTEC--PACKGLVRLGEKERHLEHECPERSL
        :   : ::. .  : .     .. : .    :  : ::  :   . . :.:. :  :  
XP_011 YCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREA
         120       130       140       150       160       170     

               170            180       190       200       210    
pF1KE1 SCRHCRA--PCC---GAD--VKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRV
       .: ::..  :     :..  .:::.       ..     .... ..    . ..  : . 
XP_011 TCSHCKSQVPMIALQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKS
         180       190       200       210       220       230     

          220       230           240       250       260       270
pF1KE1 PCRFHAIGCLETVEGEKQQE----HEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQ
          .:   :   .: :.:.:    .: . :  ::  ...:  :    :  . .   .  .
XP_011 IQSLHNQICSFEIEIERQKEMLRNNESKIL--HLQRVIDSQAEKLKELDKEIRPFRQNWE
         240       250       260         270       280       290   

              280       290       300       310       320       330
pF1KE1 RCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGL
       . .:..... ...: :     :.: :  .:   .:.  :       : :.... .. ...
XP_011 EADSMKSSVESLQNRVT----ELESVDKSAGQVARNTGL-------LESQLSRHDQMLSV
           300       310           320              330       340  

              340       350       360       370       380       390
pF1KE1 KDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM
       .:. .::.. .   .:...:.::.:::: :. :..:::: :.  ...:  :::. .::::
XP_011 HDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM
            350       360       370       380       390       400  

              400       410       420       430        440         
pF1KE1 CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQ-NNREHVIDAFRP
       : :.:::::: :.:::::::::.:.:  :::: :::.:::::::.:: ..:.:. :::.:
XP_011 CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKP
            410       420       430       440       450       460  

     450       460       470       480       490       500    
pF1KE1 DVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL   
       : .::::..:...::::::::.:   . .: ...:..::.::::.::: . :   
XP_011 DPNSSSFKKPTGEMNIASGCPVFVAQTVLE-NGTYIKDDTIFIKVIVDTSDLPDP
            470       480       490        500       510      




501 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:44:19 2016 done: Sat Nov  5 07:44:21 2016
 Total Scan time: 10.200 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com