Result of FASTA (omim) for pFN21AE1412
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1412, 149 aa
  1>>>pF1KE1412 149 - 149 aa - 149 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0203+/-0.000403; mu= 14.6279+/- 0.025
 mean_var=109.1916+/-22.285, 0's: 0 Z-trim(115.0): 279  B-trim: 765 in 3/51
 Lambda= 0.122738
 statistics sampled from 24762 (25140) to 24762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.295), width:  16
 Scan time:  4.990

The best scores are:                                      opt bits E(85289)
NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149)  970 181.8 3.7e-46
NP_008819 (OMIM: 114180,614916,616247) calmodulin  ( 149)  855 161.4 4.9e-40
NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149)  855 161.4 4.9e-40
NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149)  855 161.4 4.9e-40
NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149)  855 161.4 4.9e-40
XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150)  848 160.2 1.2e-39
NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197)  848 160.3 1.4e-39
NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113)  646 124.2 5.8e-29
NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  646 124.2 5.8e-29
NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  646 124.2 5.8e-29
NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  646 124.2 5.8e-29
NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  646 124.2 5.8e-29
NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113)  646 124.2 5.8e-29
NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  646 124.2 5.8e-29
NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens]  ( 172)  494 97.5 9.4e-21
NP_003271 (OMIM: 191040,611879,613243) troponin C, ( 161)  488 96.4 1.9e-20
NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160)  485 95.9 2.7e-20
NP_004335 (OMIM: 300006) centrin-2 [Homo sapiens]  ( 172)  478 94.7 6.7e-20
XP_011527333 (OMIM: 191039) PREDICTED: troponin C, ( 145)  466 92.5 2.6e-19
NP_059118 (OMIM: 605183) calmodulin-like protein 5 ( 146)  465 92.3   3e-19
NP_066299 (OMIM: 609931) myosin light polypeptide  ( 151)  430 86.1 2.2e-17
NP_524147 (OMIM: 609931) myosin light polypeptide  ( 151)  430 86.1 2.2e-17
NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181)  411 82.9 2.6e-16
XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203)  411 82.9 2.8e-16
NP_004267 (OMIM: 605563) calcium-binding protein 1 ( 167)  409 82.5 3.1e-16
NP_112482 (OMIM: 605563) calcium-binding protein 1 ( 227)  409 82.7 3.8e-16
NP_001317242 (OMIM: 610171) calmodulin-like protei ( 164)  407 82.1   4e-16
NP_001028849 (OMIM: 605563) calcium-binding protei ( 370)  409 82.9 5.1e-16
NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208)  406 82.1 5.2e-16
NP_001186558 (OMIM: 609930) myosin light chain 6B  ( 208)  406 82.1 5.2e-16
NP_524146 (OMIM: 160780) myosin light chain 1/3, s ( 150)  404 81.5 5.4e-16
NP_524144 (OMIM: 160780) myosin light chain 1/3, s ( 194)  404 81.7 6.4e-16
NP_006088 (OMIM: 609905) myosin regulatory light p ( 172)  402 81.3 7.6e-16
NP_062829 (OMIM: 607315) calcium-binding protein 5 ( 173)  398 80.6 1.2e-15
XP_016882481 (OMIM: 607315) PREDICTED: calcium-bin ( 284)  398 80.8 1.7e-15
NP_057450 (OMIM: 607314,614899) calcium-binding pr ( 220)  391 79.4 3.4e-15
NP_001305425 (OMIM: 607314,614899) calcium-binding ( 226)  391 79.5 3.5e-15
NP_000249 (OMIM: 160790,608751) myosin light chain ( 195)  387 78.7 5.1e-15
NP_001138417 (OMIM: 609211) myosin regulatory ligh ( 172)  384 78.1 6.9e-15
NP_001138416 (OMIM: 609211) myosin regulatory ligh ( 172)  384 78.1 6.9e-15
NP_291024 (OMIM: 609211) myosin regulatory light c ( 172)  384 78.1 6.9e-15
XP_016875728 (OMIM: 605563) PREDICTED: calcium-bin ( 202)  379 77.3 1.4e-14
XP_016873514 (OMIM: 608965,610427) PREDICTED: calc ( 170)  378 77.0 1.4e-14
NP_001287825 (OMIM: 608965,610427) calcium-binding ( 170)  378 77.0 1.4e-14
XP_011543485 (OMIM: 608965,610427) PREDICTED: calc ( 170)  378 77.0 1.4e-14
NP_001287824 (OMIM: 608965,610427) calcium-binding ( 170)  378 77.0 1.4e-14
XP_016875727 (OMIM: 605563) PREDICTED: calcium-bin ( 262)  379 77.4 1.6e-14
NP_004356 (OMIM: 602907) centrin-3 isoform 2 [Homo ( 167)  376 76.6 1.8e-14
NP_660201 (OMIM: 608965,610427) calcium-binding pr ( 275)  378 77.3 1.9e-14
XP_011543483 (OMIM: 608965,610427) PREDICTED: calc ( 295)  378 77.3   2e-14


>>NP_005176 (OMIM: 114184) calmodulin-like protein 3 [Ho  (149 aa)
 initn: 970 init1: 970 opt: 970  Z-score: 949.8  bits: 181.8 E(85289): 3.7e-46
Smith-Waterman score: 970; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KE1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
               70        80        90       100       110       120

              130       140         
pF1KE1 EVDEMIRAADTDGDGQVNYEEFVRVLVSK
       :::::::::::::::::::::::::::::
NP_005 EVDEMIRAADTDGDGQVNYEEFVRVLVSK
              130       140         

>>NP_008819 (OMIM: 114180,614916,616247) calmodulin [Hom  (149 aa)
 initn: 1125 init1: 855 opt: 855  Z-score: 839.7  bits: 161.4 E(85289): 4.9e-40
Smith-Waterman score: 855; 84.6% identity (96.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KE1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
       :::::::::..::::::::::::::: :::.::::::::::::::::::.::..:.: ::
NP_008 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
       :::.:::::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::
NP_008 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
               70        80        90       100       110       120

              130       140         
pF1KE1 EVDEMIRAADTDGDGQVNYEEFVRVLVSK
       ::::::: :: ::::::::::::.....:
NP_008 EVDEMIREADIDGDGQVNYEEFVQMMTAK
              130       140         

>>NP_001316851 (OMIM: 114183) calmodulin isoform 1 [Homo  (149 aa)
 initn: 1125 init1: 855 opt: 855  Z-score: 839.7  bits: 161.4 E(85289): 4.9e-40
Smith-Waterman score: 855; 84.6% identity (96.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KE1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
       :::::::::..::::::::::::::: :::.::::::::::::::::::.::..:.: ::
NP_001 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
       :::.:::::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::
NP_001 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
               70        80        90       100       110       120

              130       140         
pF1KE1 EVDEMIRAADTDGDGQVNYEEFVRVLVSK
       ::::::: :: ::::::::::::.....:
NP_001 EVDEMIREADIDGDGQVNYEEFVQMMTAK
              130       140         

>>NP_005175 (OMIM: 114183) calmodulin isoform 1 [Homo sa  (149 aa)
 initn: 1125 init1: 855 opt: 855  Z-score: 839.7  bits: 161.4 E(85289): 4.9e-40
Smith-Waterman score: 855; 84.6% identity (96.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KE1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
       :::::::::..::::::::::::::: :::.::::::::::::::::::.::..:.: ::
NP_005 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
       :::.:::::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::
NP_005 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
               70        80        90       100       110       120

              130       140         
pF1KE1 EVDEMIRAADTDGDGQVNYEEFVRVLVSK
       ::::::: :: ::::::::::::.....:
NP_005 EVDEMIREADIDGDGQVNYEEFVQMMTAK
              130       140         

>>NP_001734 (OMIM: 114182,616249) calmodulin isoform 2 [  (149 aa)
 initn: 1125 init1: 855 opt: 855  Z-score: 839.7  bits: 161.4 E(85289): 4.9e-40
Smith-Waterman score: 855; 84.6% identity (96.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KE1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG
       :::::::::..::::::::::::::: :::.::::::::::::::::::.::..:.: ::
NP_001 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE
       :::.:::::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::
NP_001 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE
               70        80        90       100       110       120

              130       140         
pF1KE1 EVDEMIRAADTDGDGQVNYEEFVRVLVSK
       ::::::: :: ::::::::::::.....:
NP_001 EVDEMIREADIDGDGQVNYEEFVQMMTAK
              130       140         

>>XP_006720321 (OMIM: 114180,614916,616247) PREDICTED: c  (150 aa)
 initn: 1118 init1: 848 opt: 848  Z-score: 833.0  bits: 160.2 E(85289): 1.2e-39
Smith-Waterman score: 848; 84.5% identity (95.9% similar) in 148 aa overlap (2-149:3-150)

                10        20        30        40        50         
pF1KE1  MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRD
         ::::::::..::::::::::::::: :::.::::::::::::::::::.::..:.: :
XP_006 MQADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE1 GNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSD
       ::::.:::::: ::::::::::.:::::::::::::::::..:::::::::: :::::.:
XP_006 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD
               70        80        90       100       110       120

     120       130       140         
pF1KE1 EEVDEMIRAADTDGDGQVNYEEFVRVLVSK
       :::::::: :: ::::::::::::.....:
XP_006 EEVDEMIREADIDGDGQVNYEEFVQMMTAK
              130       140       150

>>NP_001292553 (OMIM: 114182,616249) calmodulin isoform   (197 aa)
 initn: 1118 init1: 848 opt: 848  Z-score: 831.7  bits: 160.3 E(85289): 1.4e-39
Smith-Waterman score: 848; 84.5% identity (95.9% similar) in 148 aa overlap (2-149:50-197)

                                            10        20        30 
pF1KE1                              MADQLTEEQVTEFKEAFSLFDKDGDGCITTR
                                     ::::::::..::::::::::::::: :::.
NP_001 GCVVASRKPVALAAWLALYIASHFAQQPCKADQLTEEQIAEFKEAFSLFDKDGDGTITTK
      20        30        40        50        60        70         

              40        50        60        70        80        90 
pF1KE1 ELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMKDTDNEEEIREAFR
       ::::::::::::::::::.::..:.: :::::.:::::: ::::::::::.:::::::::
NP_001 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR
      80        90       100       110       120       130         

             100       110       120       130       140         
pF1KE1 VFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFVRVLVSK
       ::::::::..:::::::::: :::::.::::::::: :: ::::::::::::.....:
NP_001 VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
     140       150       160       170       180       190       

>>NP_001292555 (OMIM: 114182,616249) calmodulin isoform   (113 aa)
 initn: 730 init1: 646 opt: 646  Z-score: 641.0  bits: 124.2 E(85289): 5.8e-29
Smith-Waterman score: 646; 83.2% identity (95.6% similar) in 113 aa overlap (37-149:1-113)

         10        20        30        40        50        60      
pF1KE1 EEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDF
                                     :::::::::::::.::..:.: :::::.::
NP_001                               MRSLGQNPTEAELQDMINEVDADGNGTIDF
                                             10        20        30

         70        80        90       100       110       120      
pF1KE1 PEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMI
       :::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::::::::
NP_001 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
               40        50        60        70        80        90

        130       140         
pF1KE1 RAADTDGDGQVNYEEFVRVLVSK
       : :: ::::::::::::.....:
NP_001 READIDGDGQVNYEEFVQMMTAK
              100       110   

>>NP_001316850 (OMIM: 114183) calmodulin isoform 2 [Homo  (113 aa)
 initn: 730 init1: 646 opt: 646  Z-score: 641.0  bits: 124.2 E(85289): 5.8e-29
Smith-Waterman score: 646; 83.2% identity (95.6% similar) in 113 aa overlap (37-149:1-113)

         10        20        30        40        50        60      
pF1KE1 EEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDF
                                     :::::::::::::.::..:.: :::::.::
NP_001                               MRSLGQNPTEAELQDMINEVDADGNGTIDF
                                             10        20        30

         70        80        90       100       110       120      
pF1KE1 PEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMI
       :::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::::::::
NP_001 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
               40        50        60        70        80        90

        130       140         
pF1KE1 RAADTDGDGQVNYEEFVRVLVSK
       : :: ::::::::::::.....:
NP_001 READIDGDGQVNYEEFVQMMTAK
              100       110   

>>NP_001316853 (OMIM: 114183) calmodulin isoform 2 [Homo  (113 aa)
 initn: 730 init1: 646 opt: 646  Z-score: 641.0  bits: 124.2 E(85289): 5.8e-29
Smith-Waterman score: 646; 83.2% identity (95.6% similar) in 113 aa overlap (37-149:1-113)

         10        20        30        40        50        60      
pF1KE1 EEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDF
                                     :::::::::::::.::..:.: :::::.::
NP_001                               MRSLGQNPTEAELQDMINEVDADGNGTIDF
                                             10        20        30

         70        80        90       100       110       120      
pF1KE1 PEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMI
       :::: ::::::::::.:::::::::::::::::..:::::::::: :::::.::::::::
NP_001 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI
               40        50        60        70        80        90

        130       140         
pF1KE1 RAADTDGDGQVNYEEFVRVLVSK
       : :: ::::::::::::.....:
NP_001 READIDGDGQVNYEEFVQMMTAK
              100       110   




149 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:07:58 2016 done: Mon Nov  7 00:07:59 2016
 Total Scan time:  4.990 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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