FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5409, 349 aa 1>>>pF1KE5409 349 - 349 aa - 349 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7998+/-0.000851; mu= 14.5200+/- 0.051 mean_var=81.7628+/-16.344, 0's: 0 Z-trim(107.4): 15 B-trim: 0 in 0/53 Lambda= 0.141839 statistics sampled from 9548 (9554) to 9548 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.293), width: 16 Scan time: 2.260 The best scores are: opt bits E(32554) CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10 ( 349) 2208 461.4 5e-130 CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9 ( 331) 382 87.7 1.5e-17 >>CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10 (349 aa) initn: 2208 init1: 2208 opt: 2208 Z-score: 2447.8 bits: 461.4 E(32554): 5e-130 Smith-Waterman score: 2208; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349) 10 20 30 40 50 60 pF1KE5 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI 250 260 270 280 290 300 310 320 330 340 pF1KE5 AQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 AQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC 310 320 330 340 >>CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9 (331 aa) initn: 253 init1: 146 opt: 382 Z-score: 428.7 bits: 87.7 E(32554): 1.5e-17 Smith-Waterman score: 382; 34.1% identity (61.0% similar) in 223 aa overlap (112-330:89-309) 90 100 110 120 130 140 pF1KE5 SAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTS ::.: : ::. : ::::.:.: : ..::. CCDS68 GSEEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTD 60 70 80 90 100 110 150 160 170 180 190 pF1KE5 MLSG--SKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPL : .. .: ::. : :::::: . ::..:. ::..:.: .. :: . :. ... . CCDS68 MYNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVM 120 130 140 150 160 170 200 210 220 230 240 250 pF1KE5 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFY--IRS :: : :. . :: ... :. . .: : :: : :.:.: .:. CCDS68 YSNLDLKTQEAYEMAVRG-LIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRK 180 190 200 210 220 230 260 270 280 290 300 310 pF1KE5 LVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELAL :: .:: ::.. : .. ::..: :::. :: . .: . .: .... . ::: CCDS68 LVHEIGLELKTTAVCTQVRRTRDGFFTLDS-ALLRTQWDLTNIQDAIRAATPQVAAELEK 240 250 260 270 280 290 320 330 340 pF1KE5 KKSKPESNEQVLSCEYITLNEPKREDDVIKTC . : ...:. : CCDS68 SLSPGLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ 300 310 320 330 349 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:27:48 2016 done: Tue Nov 8 00:27:49 2016 Total Scan time: 2.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]