FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6151, 97 aa 1>>>pF1KE6151 97 - 97 aa - 97 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7737+/-0.000478; mu= 12.5898+/- 0.029 mean_var=58.3835+/-11.887, 0's: 0 Z-trim(115.6): 9 B-trim: 820 in 1/50 Lambda= 0.167853 statistics sampled from 16174 (16183) to 16174 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.497), width: 16 Scan time: 1.310 The best scores are: opt bits E(32554) CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16 ( 97) 699 176.0 3.3e-45 CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12 ( 109) 388 100.7 1.7e-22 >>CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16 (97 aa) initn: 699 init1: 699 opt: 699 Z-score: 925.2 bits: 176.0 E(32554): 3.3e-45 Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97) 10 20 30 40 50 60 pF1KE6 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR 10 20 30 40 50 60 70 80 90 pF1KE6 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP ::::::::::::::::::::::::::::::::::::: CCDS10 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP 70 80 90 >>CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12 (109 aa) initn: 292 init1: 282 opt: 388 Z-score: 517.5 bits: 100.7 E(32554): 1.7e-22 Smith-Waterman score: 388; 63.4% identity (78.5% similar) in 93 aa overlap (6-95:17-107) 10 20 30 40 pF1KE6 MALPLRP-LTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSY :: : : ..:.:.: .:. :: :. ::: .:::.::. .: : CCDS91 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGS--ARMWKTLTFFVALPGVAVSMLNVY 10 20 30 40 50 50 60 70 80 90 pF1KE6 L--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP : : :.. :::: : ::::::::.:::::::::::: :::::::::: CCDS91 LKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 60 70 80 90 100 97 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:53:58 2016 done: Tue Nov 8 09:53:58 2016 Total Scan time: 1.310 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]