Result of FASTA (omim) for
pFN21AE6108
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6108, 121 aa
1>>>pF1KE6108 121 - 121 aa - 121 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0463+/-0.000242; mu= 12.6716+/- 0.015
mean_var=69.1038+/-13.794, 0's: 0 Z-trim(122.3): 15 B-trim: 0 in 0/53
Lambda= 0.154285
statistics sampled from 40281 (40301) to 40281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.473), width: 16
Scan time: 3.990
The best scores are: opt bits E(85289)
NP_689629 (OMIM: 256000,612392) NADH dehydrogenase ( 333) 690 161.5 8.6e-40
XP_011515135 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_016868517 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_016868516 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515137 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515140 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515139 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515143 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515144 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515138 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_016868518 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515141 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515136 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_011515142 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
XP_016868519 (OMIM: 256000,612392) PREDICTED: NADH ( 281) 218 56.3 3.2e-08
>>NP_689629 (OMIM: 256000,612392) NADH dehydrogenase (ub (333 aa)
initn: 690 init1: 690 opt: 690 Z-score: 835.4 bits: 161.5 E(85289): 8.6e-40
Smith-Waterman score: 690; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)
10 20 30 40 50 60
pF1KE6 MAASAHGSVWGPLRLGIPGLCCRRPPLGLYARMRRLPGPEVSGRSVAAASGPGAWGTDHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MAASAHGSVWGPLRLGIPGLCCRRPPLGLYARMRRLPGPEVSGRSVAAASGPGAWGTDHY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 CLELLRKRDYEGYLCSLLLPAESRSSVFALRAFNVELAQAGLLLLLSCCTVCHWDLNTKH
:::::::::::::::::::::::::::::::::::::::
NP_689 CLELLRKRDYEGYLCSLLLPAESRSSVFALRAFNVELAQVKDSVSEKTIGLMRMQFWKKT
70 80 90 100 110 120
pF1KE6 C
NP_689 VEDIYCDNPPHQPVAIELWKAVKRHNLTKRWLMKIVDEREKNLDDKAYRNIKELENYAEN
130 140 150 160 170 180
>>XP_011515135 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_011 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_011 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_016868517 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_016 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_016 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_016868516 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_016 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_016 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_011515137 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_011 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_011 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_011515140 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_011 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_011 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_011515139 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_011 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_011 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_011515143 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_011 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_011 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_011515144 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_011 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_011 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
>>XP_011515138 (OMIM: 256000,612392) PREDICTED: NADH deh (281 aa)
initn: 217 init1: 217 opt: 218 Z-score: 268.6 bits: 56.3 E(85289): 3.2e-08
Smith-Waterman score: 218; 85.4% identity (87.8% similar) in 41 aa overlap (59-99:7-47)
30 40 50 60 70 80
pF1KE6 LYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVF
: . :::::::::::::::::::::::
XP_011 MPISISHSSWLVQRKRDYEGYLCSLLLPAESRSSVF
10 20 30
90 100 110 120
pF1KE6 ALRAFNVELAQAGLLLLLSCCTVCHWDLNTKHC
:::::::::::
XP_011 ALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLT
40 50 60 70 80 90
121 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:30:59 2016 done: Tue Nov 8 09:31:00 2016
Total Scan time: 3.990 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]