FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1490, 670 aa 1>>>pF1KE1490 670 - 670 aa - 670 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 14.7731+/-0.00116; mu= -22.6606+/- 0.070 mean_var=567.9302+/-118.625, 0's: 0 Z-trim(116.7): 85 B-trim: 453 in 1/53 Lambda= 0.053818 statistics sampled from 17318 (17398) to 17318 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.534), width: 16 Scan time: 5.090 The best scores are: opt bits E(32554) CCDS45954.2 PRAM1 gene_id:84106|Hs108|chr19 ( 670) 4725 381.7 1.9e-105 >>CCDS45954.2 PRAM1 gene_id:84106|Hs108|chr19 (670 aa) initn: 4725 init1: 4725 opt: 4725 Z-score: 2006.7 bits: 381.7 E(32554): 1.9e-105 Smith-Waterman score: 4725; 99.9% identity (100.0% similar) in 670 aa overlap (1-670:1-670) 10 20 30 40 50 60 pF1KE1 MAHHLPAAMENHQDFRSIKAKFQASQPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAP ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MAHHLPAAMESHQDFRSIKAKFQASQPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LPEFGAVSLKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LPEFGAVSLKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KLELSDLSKKFPQLGATPFPRKPLQPEVGEAPLKASLPEPGAPARKPLQPDELSHPARPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KLELSDLSKKFPQLGATPFPRKPLQPEVGEAPLKASLPEPGAPARKPLQPDELSHPARPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SEPKSGAFPRKLWQPEAGEATPRSPQPELSTFPKKPAQPEFNVYPKKPPQPQVGGLPKKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 SEPKSGAFPRKLWQPEAGEATPRSPQPELSTFPKKPAQPEFNVYPKKPPQPQVGGLPKKS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VPQPEFSEAAQTPLWKPQSSEPKRDSSAFPKKASQPPLSDFPKKPPQPELGDLTRTSSEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VPQPEFSEAAQTPLWKPQSSEPKRDSSAFPKKASQPPLSDFPKKPPQPELGDLTRTSSEP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 EVSVLPKRPRPAEFKALSKKPPQPELGGLPRTSSEPEFNSLPRKLLQPERRGPPRKFSQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EVSVLPKRPRPAEFKALSKKPPQPELGGLPRTSSEPEFNSLPRKLLQPERRGPPRKFSQP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 EPSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGFSSRHPLSPGFGAAGTPRWRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EPSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGFSSRHPLSPGFGAAGTPRWRS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 GGLVHSGGARPGLRPSHPPRRRPLPPASSLGHPPAKPPLPPGPVDMQSFRRPSAASIDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 GGLVHSGGARPGLRPSHPPRRRPLPPASSLGHPPAKPPLPPGPVDMQSFRRPSAASIDLR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 RTRSAAGLHFQDRQPEDIPQVPDEIYELYDDVEPRDDSSPSPKGRDEAPSVQQAARRPPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RTRSAAGLHFQDRQPEDIPQVPDEIYELYDDVEPRDDSSPSPKGRDEAPSVQQAARRPPQ 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 DPALRKEKDPQPQQLPPMDPKLLKQLRKAEKAEREFRKKFKFEGEIVVHTKMMIDPNAKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DPALRKEKDPQPQQLPPMDPKLLKQLRKAEKAEREFRKKFKFEGEIVVHTKMMIDPNAKT 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 RRGGGKHLGIRRGEILEVIEFTSNEEMLCRDPKGKYGYVPRTALLPLETEVYDDVDFCDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RRGGGKHLGIRRGEILEVIEFTSNEEMLCRDPKGKYGYVPRTALLPLETEVYDDVDFCDP 610 620 630 640 650 660 670 pF1KE1 LENQPLPLGR :::::::::: CCDS45 LENQPLPLGR 670 670 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:22:31 2016 done: Mon Nov 7 00:22:31 2016 Total Scan time: 5.090 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]