FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4542, 626 aa
  1>>>pF1KE4542 626 - 626 aa - 626 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.4402+/-0.00113; mu= -20.4912+/- 0.067
 mean_var=404.2633+/-82.886, 0's: 0 Z-trim(112.7): 100  B-trim: 58 in 1/53
 Lambda= 0.063788
 statistics sampled from 13351 (13421) to 13351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.412), width:  16
 Scan time:  4.380

The best scores are:                                      opt bits E(32554)
CCDS54068.1 GP1BA gene_id:2811|Hs108|chr17         ( 652) 2929 284.2 3.8e-76


>>CCDS54068.1 GP1BA gene_id:2811|Hs108|chr17              (652 aa)
 initn: 2890 init1: 2890 opt: 2929  Z-score: 1480.5  bits: 284.2 E(32554): 3.8e-76
Smith-Waterman score: 4136; 95.9% identity (96.0% similar) in 652 aa overlap (1-626:1-652)

               10        20        30        40        50        60
pF1KE4 MPLLLLLLLLPSPLHPHPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MPLLLLLLLLPSPLHPHPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 ENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCPTLGDEGDTDLYDYYPEEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCPTLGDEGDTDLYDYYPEEDT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 EGDKVRATRTVVKFPTKAHTTPWGLFYSWSTASLDSQMPSSLHPTQESTKEQTTFPPRWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EGDKVRATRTVVKFPTKAHTTPWGLFYSWSTASLDSQMPSSLHPTQESTKEQTTFPPRWT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 PNFTLHMESITFSKTPKSTTEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PNFTLHMESITFSKTPKSTTEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEPAPS
              370       380       390       400       410       420

                                        430       440       450    
pF1KE4 PTTPEPT--------------------------PIPTIATSPTILVSATSLITPKSTFLT
       :::::::                          :::::::::::::::::::::::::::
CCDS54 PTTPEPTSEPAPSPTTPEPTSEPAPSPTTPEPTPIPTIATSPTILVSATSLITPKSTFLT
              430       440       450       460       470       480

          460       470       480       490       500       510    
pF1KE4 TTKPVSLLESTKKTIPELDQPPKLRGVLQGHLESSRNDPFLHPDFCCLLPLGFYVLGLFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TTKPVSLLESTKKTIPELDQPPKLRGVLQGHLESSRNDPFLHPDFCCLLPLGFYVLGLFW
              490       500       510       520       530       540

          520       530       540       550       560       570    
pF1KE4 LLFASVVLILLLSWVGHVKPQALDSGQGAALTTATQTTHLELQRGRQVTVPRAWLLFLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLFASVVLILLLSWVGHVKPQALDSGQGAALTTATQTTHLELQRGRQVTVPRAWLLFLRG
              550       560       570       580       590       600

          580       590       600       610       620      
pF1KE4 SLPTFRSSLFLWVRPNGRLGPLVAGRRPSALSQGRGQDLLSTVSIRYSGHSL
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS54 SLPTFRSSLFLWVRPNGRVGPLVAGRRPSALSQGRGQDLLSTVSIRYSGHSL
              610       620       630       640       650  




626 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:07:09 2016 done: Sun Nov  6 00:07:10 2016
 Total Scan time:  4.380 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]