FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1464, 186 aa 1>>>pF1KE1464 186 - 186 aa - 186 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6865+/-0.000826; mu= 11.9472+/- 0.049 mean_var=77.3747+/-15.445, 0's: 0 Z-trim(108.3): 20 B-trim: 302 in 1/50 Lambda= 0.145806 statistics sampled from 10113 (10121) to 10113 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.311), width: 16 Scan time: 1.940 The best scores are: opt bits E(32554) CCDS33813.1 TRAT1 gene_id:50852|Hs108|chr3 ( 186) 1242 270.1 5.6e-73 CCDS82814.1 TRAT1 gene_id:50852|Hs108|chr3 ( 149) 983 215.6 1.2e-56 >>CCDS33813.1 TRAT1 gene_id:50852|Hs108|chr3 (186 aa) initn: 1242 init1: 1242 opt: 1242 Z-score: 1423.7 bits: 270.1 E(32554): 5.6e-73 Smith-Waterman score: 1242; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186) 10 20 30 40 50 60 pF1KE1 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA 130 140 150 160 170 180 pF1KE1 KREPIN :::::: CCDS33 KREPIN >>CCDS82814.1 TRAT1 gene_id:50852|Hs108|chr3 (149 aa) initn: 983 init1: 983 opt: 983 Z-score: 1130.7 bits: 215.6 E(32554): 1.2e-56 Smith-Waterman score: 983; 100.0% identity (100.0% similar) in 147 aa overlap (40-186:3-149) 10 20 30 40 50 60 pF1KE1 FLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM :::::::::::::::::::::::::::::: CCDS82 MSDKMYSYSSDHTRVDEYYIEDTPIYGNLDDM 10 20 30 70 80 90 100 110 120 pF1KE1 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 HFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN 100 110 120 130 140 186 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:32:58 2016 done: Mon Nov 7 00:32:58 2016 Total Scan time: 1.940 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]