FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6109, 150 aa 1>>>pF1KE6109 150 - 150 aa - 150 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1951+/-0.000651; mu= 11.6576+/- 0.039 mean_var=52.2997+/-10.520, 0's: 0 Z-trim(109.1): 9 B-trim: 0 in 0/49 Lambda= 0.177347 statistics sampled from 10647 (10649) to 10647 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.327), width: 16 Scan time: 1.450 The best scores are: opt bits E(32554) CCDS10273.1 COX5A gene_id:9377|Hs108|chr15 ( 150) 999 262.9 5.4e-71 >>CCDS10273.1 COX5A gene_id:9377|Hs108|chr15 (150 aa) initn: 999 init1: 999 opt: 999 Z-score: 1388.0 bits: 262.9 E(32554): 5.4e-71 Smith-Waterman score: 999; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE6 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK 70 80 90 100 110 120 130 140 150 pF1KE6 EIYPYVIQELRPTLNELGISTPEELGLDKV :::::::::::::::::::::::::::::: CCDS10 EIYPYVIQELRPTLNELGISTPEELGLDKV 130 140 150 150 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:31:27 2016 done: Tue Nov 8 09:31:28 2016 Total Scan time: 1.450 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]