FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4512, 540 aa 1>>>pF1KE4512 540 - 540 aa - 540 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.6759+/-0.00036; mu= -6.5765+/- 0.022 mean_var=295.5393+/-60.863, 0's: 0 Z-trim(123.0): 3 B-trim: 364 in 1/57 Lambda= 0.074605 statistics sampled from 42052 (42061) to 42052 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.493), width: 16 Scan time: 10.160 The best scores are: opt bits E(85289) NP_004416 (OMIM: 247100,602201) extracellular matr ( 540) 3915 434.9 3.1e-121 NP_001189787 (OMIM: 247100,602201) extracellular m ( 567) 3426 382.2 2.2e-105 NP_073155 (OMIM: 247100,602201) extracellular matr ( 415) 1830 210.4 9e-54 >>NP_004416 (OMIM: 247100,602201) extracellular matrix p (540 aa) initn: 3915 init1: 3915 opt: 3915 Z-score: 2297.6 bits: 434.9 E(85289): 3.1e-121 Smith-Waterman score: 3915; 99.6% identity (99.8% similar) in 540 aa overlap (1-540:1-540) 10 20 30 40 50 60 pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: NP_004 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE 490 500 510 520 530 540 >>NP_001189787 (OMIM: 247100,602201) extracellular matri (567 aa) initn: 3417 init1: 3417 opt: 3426 Z-score: 2012.8 bits: 382.2 E(85289): 2.2e-105 Smith-Waterman score: 3842; 94.7% identity (94.9% similar) in 567 aa overlap (1-540:1-567) 10 20 30 40 50 60 pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP 10 20 30 40 50 60 70 80 90 pF1KE4 DSSQHGPPFEGQSQ---------------------------VQPPPSQEATPLQQEKLLP ::::::::::::: ::::::::::::::::::: NP_001 DSSQHGPPFEGQSGKEGRGPRPHSQPWLGERVGCSHIPPSIVQPPPSQEATPLQQEKLLP 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE4 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQ :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: NP_001 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQ 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE4 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE4 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE4 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE4 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE4 ECFARRAPYPNYDRDILTIDISRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: NP_001 ECFARRAPYPNYDRDILTIDIGRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP 430 440 450 460 470 480 460 470 480 490 500 510 pF1KE4 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD 490 500 510 520 530 540 520 530 540 pF1KE4 TENAKGQGEQGSTGGTNISSTSEPKEE ::::::::::::::::::::::::::: NP_001 TENAKGQGEQGSTGGTNISSTSEPKEE 550 560 >>NP_073155 (OMIM: 247100,602201) extracellular matrix p (415 aa) initn: 1829 init1: 1791 opt: 1830 Z-score: 1086.4 bits: 210.4 E(85289): 9e-54 Smith-Waterman score: 2728; 76.5% identity (76.7% similar) in 540 aa overlap (1-540:1-415) 10 20 30 40 50 60 pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWE-- 190 200 210 220 230 250 260 270 280 290 300 pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP NP_073 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK NP_073 ------------------------------------------------------------ 370 380 390 400 410 420 pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN :::::::::::::::::::::::::::::::::::::::::::::::::::.::::: NP_073 ---DTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN 240 250 260 270 280 290 430 440 450 460 470 480 pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW 300 310 320 330 340 350 490 500 510 520 530 540 pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE 360 370 380 390 400 410 540 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:20:35 2016 done: Sun Nov 6 00:20:37 2016 Total Scan time: 10.160 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]