FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3926, 551 aa
  1>>>pF1KE3926 551 - 551 aa - 551 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4584+/-0.000949; mu= 1.6111+/- 0.057
 mean_var=257.3264+/-53.934, 0's: 0 Z-trim(114.8): 83  B-trim: 661 in 1/49
 Lambda= 0.079952
 statistics sampled from 15273 (15358) to 15273 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.472), width:  16
 Scan time:  4.020

The best scores are:                                      opt bits E(32554)
CCDS31274.1 TRIM8 gene_id:81603|Hs108|chr10        ( 551) 3866 459.0 6.7e-129


>>CCDS31274.1 TRIM8 gene_id:81603|Hs108|chr10             (551 aa)
 initn: 3866 init1: 3866 opt: 3866  Z-score: 2427.7  bits: 459.0 E(32554): 6.7e-129
Smith-Waterman score: 3866; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)

               10        20        30        40        50        60
pF1KE3 MAENWKNCFEEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDSGLVRCPECNQAYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAENWKNCFEEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDSGLVRCPECNQAYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QKPGLEKNLKLTNIVEKFNALHVEKPPAALHCVFCRRGPPLPAQKVCLRCEAPCCQSHVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QKPGLEKNLKLTNIVEKFNALHVEKPPAALHCVFCRRGPPLPAQKVCLRCEAPCCQSHVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 THLQQPSTARGHLLVEADDVRAWSCPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 THLQQPSTARGHLLVEADDVRAWSCPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DVEIRRNEIRKMLMKQQDRLEEREQDIEDQLYKLESDKRLVEEKVNQLKEEVRLQYEKLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DVEIRRNEIRKMLMKQQDRLEEREQDIEDQLYKLESDKRLVEEKVNQLKEEVRLQYEKLH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 QLLDEDLRQTVEVLDKAQAKFCSENAAQALHLGERMQEAKKLLGSLQLLFDKTEDVSFMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QLLDEDLRQTVEVLDKAQAKFCSENAAQALHLGERMQEAKKLLGSLQLLFDKTEDVSFMK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 NTKSVKILMDRTQTCTSSSLSPTKIGHLNSKLFLNEVAKKEKQLRKMLEGPFSTPVPFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NTKSVKILMDRTQTCTSSSLSPTKIGHLNSKLFLNEVAKKEKQLRKMLEGPFSTPVPFLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 SVPLYPCGVSSSGAEKRKHSTAFPEASFLETSSGPVGGQYGAAGTASGEGQSGQPLGPCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SVPLYPCGVSSSGAEKRKHSTAFPEASFLETSSGPVGGQYGAAGTASGEGQSGQPLGPCS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 STQHLVALPGGAQPVHSSPVFPPSQYPNGSAAQQPMLPQYGGRKILVCSVDNCYCSSVAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 STQHLVALPGGAQPVHSSPVFPPSQYPNGSAAQQPMLPQYGGRKILVCSVDNCYCSSVAN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 HGGHQPYPRSGHFPWTVPSQEYSHPLPPTPSVPQSLPSLAVRDWLDASQQPGHQDFYRVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HGGHQPYPRSGHFPWTVPSQEYSHPLPPTPSVPQSLPSLAVRDWLDASQQPGHQDFYRVY
              490       500       510       520       530       540

              550 
pF1KE3 GQPSTKHYVTS
       :::::::::::
CCDS31 GQPSTKHYVTS
              550 




551 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:52:49 2016 done: Sun Nov  6 08:52:49 2016
 Total Scan time:  4.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]