FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6421, 558 aa 1>>>pF1KE6421 558 - 558 aa - 558 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6217+/-0.000895; mu= 17.4681+/- 0.054 mean_var=75.7566+/-15.061, 0's: 0 Z-trim(106.8): 20 B-trim: 0 in 0/51 Lambda= 0.147355 statistics sampled from 9202 (9208) to 9202 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.283), width: 16 Scan time: 2.190 The best scores are: opt bits E(32554) CCDS12379.1 ISYNA1 gene_id:51477|Hs108|chr19 ( 558) 3724 801.3 0 CCDS54234.1 ISYNA1 gene_id:51477|Hs108|chr19 ( 504) 3114 671.6 6.1e-193 CCDS62603.1 ISYNA1 gene_id:51477|Hs108|chr19 ( 430) 2891 624.2 1e-178 >>CCDS12379.1 ISYNA1 gene_id:51477|Hs108|chr19 (558 aa) initn: 3724 init1: 3724 opt: 3724 Z-score: 4277.5 bits: 801.3 E(32554): 0 Smith-Waterman score: 3724; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558) 10 20 30 40 50 60 pF1KE6 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKVHPTSTRFTFRTARQVPRLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKVHPTSTRFTFRTARQVPRLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VMLVGWGGNNGSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VMLVGWGGNNGSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG 490 500 510 520 530 540 550 pF1KE6 CTGDANGHLQEEPPMPTT :::::::::::::::::: CCDS12 CTGDANGHLQEEPPMPTT 550 >>CCDS54234.1 ISYNA1 gene_id:51477|Hs108|chr19 (504 aa) initn: 3113 init1: 3113 opt: 3114 Z-score: 3577.3 bits: 671.6 E(32554): 6.1e-193 Smith-Waterman score: 3245; 90.3% identity (90.3% similar) in 558 aa overlap (1-558:1-504) 10 20 30 40 50 60 pF1KE6 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLKVHPTSTRFTFRTARQVPRLG :::::::::::::::::::::::::::::::::::::::: CCDS54 MEAAAQFFVESPDVVYGPEAIEAQYEYRTTRVSREGGVLK-------------------- 10 20 30 40 70 80 90 100 110 120 pF1KE6 VMLVGWGGNNGSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVF :::::::::::::::::::::::::: CCDS54 ----------------------------------EANYYGSLTQAGTVSLGLDAEGQEVF 50 60 130 140 150 160 170 180 pF1KE6 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 VPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYI 70 80 90 100 110 120 190 200 210 220 230 240 pF1KE6 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPG 130 140 150 160 170 180 250 260 270 280 290 300 pF1KE6 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNGSPQNTLVPGALELAWQHRVFVG 190 200 210 220 230 240 310 320 330 340 350 360 pF1KE6 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVV 250 260 270 280 290 300 370 380 390 400 410 420 pF1KE6 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 DDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDS 310 320 330 340 350 360 430 440 450 460 470 480 pF1KE6 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALF 370 380 390 400 410 420 490 500 510 520 530 540 pF1KE6 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 RQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNG 430 440 450 460 470 480 550 pF1KE6 CTGDANGHLQEEPPMPTT :::::::::::::::::: CCDS54 CTGDANGHLQEEPPMPTT 490 500 >>CCDS62603.1 ISYNA1 gene_id:51477|Hs108|chr19 (430 aa) initn: 2891 init1: 2891 opt: 2891 Z-score: 3322.1 bits: 624.2 E(32554): 1e-178 Smith-Waterman score: 2891; 100.0% identity (100.0% similar) in 430 aa overlap (129-558:1-430) 100 110 120 130 140 150 pF1KE6 YGSLTQAGTVSLGLDAEGQEVFVPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLD :::::::::::::::::::::::::::::: CCDS62 MVAPNDLVFDGWDISSLNLAEAMRRAKVLD 10 20 30 160 170 180 190 200 210 pF1KE6 WGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 WGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSA 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE6 GLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 GLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLFAVASILEGCAFLNG 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE6 SPQNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 SPQNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNN 160 170 180 190 200 210 340 350 360 370 380 390 pF1KE6 DGENLSAPLQFRSKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 DGENLSAPLQFRSKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDE 220 230 240 250 260 270 400 410 420 430 440 450 pF1KE6 YTSELMLGGTNTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 YTSELMLGGTNTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLS 280 290 300 310 320 330 460 470 480 490 500 510 pF1KE6 LLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 LLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRV 340 350 360 370 380 390 520 530 540 550 pF1KE6 GPVAATYPMLNKKGPVPAATNGCTGDANGHLQEEPPMPTT :::::::::::::::::::::::::::::::::::::::: CCDS62 GPVAATYPMLNKKGPVPAATNGCTGDANGHLQEEPPMPTT 400 410 420 430 558 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:07:45 2016 done: Tue Nov 8 13:07:45 2016 Total Scan time: 2.190 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]