Result of FASTA (ccds) for
pFN21AE1471
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1471, 236 aa
1>>>pF1KE1471 236 - 236 aa - 236 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8665+/-0.000679; mu= 11.2583+/- 0.041
mean_var=72.3825+/-14.268, 0's: 0 Z-trim(110.6): 60 B-trim: 634 in 1/54
Lambda= 0.150750
statistics sampled from 11696 (11758) to 11696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.361), width: 16
Scan time: 2.340
The best scores are: opt bits E(32554)
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 1618 360.5 5.3e-100
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 1319 295.5 2e-80
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 579 134.5 4.2e-32
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 504 118.2 3.3e-27
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 137) 470 110.8 4.7e-25
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 263 65.8 1.8e-11
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 260 65.1 2.9e-11
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 257 64.5 4.6e-11
>>CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 (236 aa)
initn: 1618 init1: 1618 opt: 1618 Z-score: 1908.8 bits: 360.5 E(32554): 5.3e-100
Smith-Waterman score: 1618; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KE1 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
190 200 210 220 230
>>CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 (238 aa)
initn: 1390 init1: 1273 opt: 1319 Z-score: 1557.3 bits: 295.5 E(32554): 2e-80
Smith-Waterman score: 1319; 80.4% identity (93.3% similar) in 240 aa overlap (1-236:1-238)
10 20 30 40 50 60
pF1KE1 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
::. . ::::::.::::.::::::::::.:::::.::::::::::::::: ::::::::
CCDS65 MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
..:::::::::::.::::::::::::::.:::::::::::::::::::::::::::::::
CCDS65 HIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
:::::::::::::::::::::::::::.:::..:::::.::..:::::: .::..::.::
CCDS65 RTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDG---EVEEEADS-CFGDDEDDSGTEES
:::::::::::.:::.:. :..:::.::: :.: : ::: :. :. :.::::.:::
CCDS65 VKVPTTLAEYCIKTKVPSNDNSSDLLYDDLYDDDIDDEDEEEEDADCY--DDDDSGNEES
190 200 210 220 230
>>CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 (170 aa)
initn: 576 init1: 536 opt: 579 Z-score: 689.8 bits: 134.5 E(32554): 4.2e-32
Smith-Waterman score: 579; 52.5% identity (77.2% similar) in 162 aa overlap (10-167:5-163)
10 20 30 40 50
pF1KE1 MARPLVPSSQKALLL--ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYF
:.:::: .: :...::::: . :.:..::: ::: :.:::.: :::: :
CCDS32 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVF
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 KARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQ
::.: :: ::: :: ..:.:..::::. ..::::::::: : .: . : : ::: : .
CCDS32 KAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 NVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKD--REYTDIIRKQVLGTKVDA
.:.::..::::.: .:: :::::::. ..:.:... . :. . .::
CCDS32 TVETIMISVISMLADPNGDSPANVDAA---KEWREDRNGEFKRKVARCVRKSQETAFE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 ERDGVKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
>>CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 (165 aa)
initn: 484 init1: 465 opt: 504 Z-score: 601.9 bits: 118.2 E(32554): 3.3e-27
Smith-Waterman score: 504; 48.2% identity (69.9% similar) in 166 aa overlap (5-170:1-159)
10 20 30 40 50 60
pF1KE1 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
.. .. : :. : : : .: ::. . ..: ....::. :.:: .: .: : : :
CCDS13 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
:.::.::: ::: .:: .:.::::: : ::::::: : :::.. : .:::.:.:.:
CCDS13 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
. :::::.:.: ::: : :::::: : :.. ::: : ::..
CCDS13 EKILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQIVQKSLGL
120 130 140 150 160
190 200 210 220 230
pF1KE1 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
>>CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 (137 aa)
initn: 466 init1: 447 opt: 470 Z-score: 563.2 bits: 110.8 E(32554): 4.7e-25
Smith-Waterman score: 470; 52.2% identity (72.5% similar) in 138 aa overlap (33-170:1-131)
10 20 30 40 50 60
pF1KE1 RPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL
..: ....::. :.:: .: .: : : : :
CCDS33 MNEENFFEWEALIMGPEDTCFEFGVFPAIL
10 20 30
70 80 90 100 110 120
pF1KE1 KFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRT
.::.::: ::: .:: .:.::::: : ::::::: : :::.. : .:::.:.:.:.
CCDS33 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 ILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDGVK
:::::.:.: ::: : :::::: : :.. ::: : ::..
CCDS33 ILLSVVSMLAEPNDESGANVDASKM---WRD----DREQFYKIAKQIVQKSLGL
100 110 120 130
190 200 210 220 230
pF1KE1 VPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 326 init1: 249 opt: 263 Z-score: 319.4 bits: 65.8 E(32554): 1.8e-11
Smith-Waterman score: 336; 35.9% identity (64.7% similar) in 153 aa overlap (11-162:4-142)
10 20 30 40 50 60
pF1KE1 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
: . ::. ::..: . : . ::..:...:.:::.. :.:: :
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFL
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
..:: :::..:: . : ::..:::: .:..:..::. .:.:. .:
CCDS72 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRS-------------QWSPALTV
60 70 80 90
130 140 150 160 170
pF1KE1 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKD-REYTDIIRKQVLGTKVDAERD
.:::. ::: .:: .: : . .:.. ::. .. ::.:
CCDS72 SKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
100 110 120 130 140
180 190 200 210 220 230
pF1KE1 GVKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 334 init1: 210 opt: 260 Z-score: 315.7 bits: 65.1 E(32554): 2.9e-11
Smith-Waterman score: 362; 39.6% identity (68.8% similar) in 144 aa overlap (9-152:5-134)
10 20 30 40 50 60
pF1KE1 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
... :. ..: :::.: : .:.....:...:::: .: .: : ::
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKL
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
..: .:: .::. :::.::.:::.: :..:..::. .::.:: .:
CCDS41 VIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDV
60 70 80 90 100
130 140 150 160 170 180
pF1KE1 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
.:: :. :::.::: :::: .:. .:.. :
CCDS41 SSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
110 120 130 140 150
190 200 210 220 230
pF1KE1 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 332 init1: 208 opt: 257 Z-score: 312.1 bits: 64.5 E(32554): 4.6e-11
Smith-Waterman score: 359; 38.9% identity (68.1% similar) in 144 aa overlap (9-152:5-134)
10 20 30 40 50 60
pF1KE1 MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA
... :. ..: :::.: : .:.... :...:::: .: .: : ::
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKL
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 RLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNV
..: .:: .::. ::..::.:::.: :..:..::. .::.:: .:
CCDS14 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ-------------NRWSPTYDV
60 70 80 90 100
130 140 150 160 170 180
pF1KE1 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDG
.:: :. :::.::: :::: .:. .:.. :
CCDS14 SSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC
110 120 130 140 150
190 200 210 220 230
pF1KE1 VKVPTTLAEYCVKTKAPAPDEGSDLFYDDYYEDGEVEEEADSCFGDDEDDSGTEES
236 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:56:44 2016 done: Mon Nov 7 00:56:45 2016
Total Scan time: 2.340 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]