FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6314, 281 aa 1>>>pF1KB6314 281 - 281 aa - 281 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.8707+/-0.000418; mu= -17.9065+/- 0.026 mean_var=544.0041+/-111.218, 0's: 0 Z-trim(125.1): 16 B-trim: 0 in 0/61 Lambda= 0.054989 statistics sampled from 48044 (48084) to 48044 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.564), width: 16 Scan time: 7.610 The best scores are: opt bits E(85289) NP_000630 (OMIM: 134638,211980,601859) tumor necro ( 281) 1970 169.9 4.9e-42 NP_001289675 (OMIM: 134638,211980,601859) tumor ne ( 127) 882 83.2 2.7e-16 >>NP_000630 (OMIM: 134638,211980,601859) tumor necrosis (281 aa) initn: 1970 init1: 1970 opt: 1970 Z-score: 875.7 bits: 169.9 E(85289): 4.9e-42 Smith-Waterman score: 1970; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281) 10 20 30 40 50 60 pF1KB6 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 LVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWA 190 200 210 220 230 240 250 260 270 280 pF1KB6 RSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL ::::::::::::::::::::::::::::::::::::::::: NP_000 RSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL 250 260 270 280 >>NP_001289675 (OMIM: 134638,211980,601859) tumor necros (127 aa) initn: 1357 init1: 882 opt: 882 Z-score: 413.6 bits: 83.2 E(85289): 2.7e-16 Smith-Waterman score: 882; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KB6 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: NP_001 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELREATPV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG NP_001 HPLKKRS 281 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 07:56:34 2016 done: Sat Nov 5 07:56:36 2016 Total Scan time: 7.610 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]