FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1516, 1443 aa 1>>>pF1KE1516 1443 - 1443 aa - 1443 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2271+/-0.00104; mu= 18.3393+/- 0.063 mean_var=74.3965+/-15.101, 0's: 0 Z-trim(103.8): 24 B-trim: 0 in 0/50 Lambda= 0.148696 statistics sampled from 7572 (7581) to 7572 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.233), width: 16 Scan time: 4.440 The best scores are: opt bits E(32554) CCDS34966.1 CPSF1 gene_id:29894|Hs108|chr8 (1443) 9599 2069.5 0 >>CCDS34966.1 CPSF1 gene_id:29894|Hs108|chr8 (1443 aa) initn: 9599 init1: 9599 opt: 9599 Z-score: 11116.4 bits: 2069.5 E(32554): 0 Smith-Waterman score: 9599; 100.0% identity (100.0% similar) in 1443 aa overlap (1-1443:1-1443) 10 20 30 40 50 60 pF1KE1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 KKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 KKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 PVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PVRKEEEDNPKGEGTEQEPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 ATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 ATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMS 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE1 AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGARDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGARDE 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE1 LGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAE 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE1 PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQ 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE1 GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE1 FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE1 LRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 LRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE1 TAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 TAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLIS 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE1 PVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRIL 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KE1 IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KE1 TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 pF1KE1 MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAT 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 pF1KE1 EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 EGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 pF1KE1 FRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 FRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVT 1390 1400 1410 1420 1430 1440 pF1KE1 AHF ::: CCDS34 AHF 1443 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:05:03 2016 done: Mon Nov 7 01:05:04 2016 Total Scan time: 4.440 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]