FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4537, 605 aa 1>>>pF1KE4537 605 - 605 aa - 605 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7806+/-0.000845; mu= 9.2909+/- 0.051 mean_var=150.8850+/-29.366, 0's: 0 Z-trim(112.6): 24 B-trim: 0 in 0/51 Lambda= 0.104412 statistics sampled from 13322 (13341) to 13322 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.41), width: 16 Scan time: 3.520 The best scores are: opt bits E(32554) CCDS11625.1 PPM1D gene_id:8493|Hs108|chr17 ( 605) 4108 630.5 1.9e-180 >>CCDS11625.1 PPM1D gene_id:8493|Hs108|chr17 (605 aa) initn: 4108 init1: 4108 opt: 4108 Z-score: 3353.1 bits: 630.5 E(32554): 1.9e-180 Smith-Waterman score: 4108; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605) 10 20 30 40 50 60 pF1KE4 MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRPSPAALPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRPSPAALPG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFAVCDGHGGREAAQFAREHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFAVCDGHGGREAAQFAREHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 WGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 WGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVII 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 RGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERERIEGLGGSVMNKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERERIEGLGGSVMNKSG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 VNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALGDLWSYDFFSGEFVVSPEPDTSVHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALGDLWSYDFFSGEFVVSPEPDTSVHT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 LDPQKHKYIILGSDGLWNMIPPQDAISMCQDQEEKKYLMGEHGQSCAKMLVNRALGRWRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LDPQKHKYIILGSDGLWNMIPPQDAISMCQDQEEKKYLMGEHGQSCAKMLVNRALGRWRQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 RMLRADNTSAIVICISPEVDNQGNFTNEDELYLNLTDSPSYNSQETCVMTPSPCSTPPVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RMLRADNTSAIVICISPEVDNQGNFTNEDELYLNLTDSPSYNSQETCVMTPSPCSTPPVK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 SLEEDPWPRVNSKDHIPALVRSNAFSENFLEVSAEIARENVQGVVIPSKDPEPLEENCAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SLEEDPWPRVNSKDHIPALVRSNAFSENFLEVSAEIARENVQGVVIPSKDPEPLEENCAK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 ALTLRIHDSLNNSLPIGLVPTNSTNTVMDQKNLKMSTPGQMKAQEIERTPPTNFKRTLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ALTLRIHDSLNNSLPIGLVPTNSTNTVMDQKNLKMSTPGQMKAQEIERTPPTNFKRTLEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 SNSGPLMKKHRRNGLSRSSGAQPASLPTTSQRKNSVKLTMRRRLRGQKKIGNPLLHQHRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SNSGPLMKKHRRNGLSRSSGAQPASLPTTSQRKNSVKLTMRRRLRGQKKIGNPLLHQHRK 550 560 570 580 590 600 pF1KE4 TVCVC ::::: CCDS11 TVCVC 605 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:08:59 2016 done: Sun Nov 6 00:09:00 2016 Total Scan time: 3.520 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]