FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8241, 464 aa 1>>>pF1KB8241 464 - 464 aa - 464 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2752+/-0.000788; mu= 17.7180+/- 0.047 mean_var=65.6361+/-13.161, 0's: 0 Z-trim(107.8): 11 B-trim: 78 in 1/47 Lambda= 0.158308 statistics sampled from 9770 (9774) to 9770 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.3), width: 16 Scan time: 3.120 The best scores are: opt bits E(32554) CCDS8173.1 NDUFV1 gene_id:4723|Hs108|chr11 ( 464) 3184 736.0 1.9e-212 CCDS53669.1 NDUFV1 gene_id:4723|Hs108|chr11 ( 455) 3027 700.2 1.2e-201 >>CCDS8173.1 NDUFV1 gene_id:4723|Hs108|chr11 (464 aa) initn: 3184 init1: 3184 opt: 3184 Z-score: 3927.6 bits: 736.0 E(32554): 1.9e-212 Smith-Waterman score: 3184; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464) 10 20 30 40 50 60 pF1KB8 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE 370 380 390 400 410 420 430 440 450 460 pF1KB8 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS :::::::::::::::::::::::::::::::::::::::::::: CCDS81 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS 430 440 450 460 >>CCDS53669.1 NDUFV1 gene_id:4723|Hs108|chr11 (455 aa) initn: 3027 init1: 3027 opt: 3027 Z-score: 3734.0 bits: 700.2 E(32554): 1.2e-201 Smith-Waterman score: 3100; 98.1% identity (98.1% similar) in 464 aa overlap (1-464:1-455) 10 20 30 40 50 60 pF1KB8 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG ::::::::::::::: :::::::::::::::::::::::::::::::::::: CCDS53 MLATRRLLGWSLPAR---------TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB8 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB8 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB8 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB8 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS 300 310 320 330 340 350 370 380 390 400 410 420 pF1KB8 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE 360 370 380 390 400 410 430 440 450 460 pF1KB8 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS :::::::::::::::::::::::::::::::::::::::::::: CCDS53 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS 420 430 440 450 464 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:18:52 2016 done: Mon Nov 7 01:18:52 2016 Total Scan time: 3.120 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]