FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6711, 79 aa
  1>>>pF1KB6711 79 - 79 aa - 79 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4990+/-0.00047; mu= 11.7100+/- 0.028
 mean_var=48.3211+/- 9.557, 0's: 0 Z-trim(113.5): 7  B-trim: 0 in 0/54
 Lambda= 0.184504
 statistics sampled from 14093 (14097) to 14093 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.433), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS1077.1 CKS1B gene_id:1163|Hs108|chr1           (  79)  561 155.6 2.9e-39
CCDS6682.1 CKS2 gene_id:1164|Hs108|chr9            (  79)  466 130.3 1.2e-31


>>CCDS1077.1 CKS1B gene_id:1163|Hs108|chr1                (79 aa)
 initn: 561 init1: 561 opt: 561  Z-score: 818.4  bits: 155.6 E(32554): 2.9e-39
Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKKPKK
       :::::::::::::::::::
CCDS10 EPEPHILLFRRPLPKKPKK
               70         

>>CCDS6682.1 CKS2 gene_id:1164|Hs108|chr9                 (79 aa)
 initn: 469 init1: 458 opt: 466  Z-score: 681.8  bits: 130.3 E(32554): 1.2e-31
Smith-Waterman score: 466; 81.0% identity (91.1% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
       :.:::::::::: ::..::::::::....: ::::::::: ::: :::::: ::::::::
CCDS66 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKKPKK
       :::::::::::::::  .:
CCDS66 EPEPHILLFRRPLPKDQQK
               70         




79 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:19:32 2016 done: Mon Nov  7 01:19:32 2016
 Total Scan time:  1.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]