FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5604, 477 aa 1>>>pF1KE5604 477 - 477 aa - 477 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2909+/-0.000419; mu= 18.2276+/- 0.026 mean_var=71.7549+/-14.871, 0's: 0 Z-trim(110.8): 11 B-trim: 0 in 0/53 Lambda= 0.151408 statistics sampled from 19181 (19191) to 19181 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.225), width: 16 Scan time: 7.930 The best scores are: opt bits E(85289) NP_001035526 (OMIM: 610957,613561) tyrosine--tRNA ( 477) 3168 701.7 1.2e-201 >>NP_001035526 (OMIM: 610957,613561) tyrosine--tRNA liga (477 aa) initn: 3168 init1: 3168 opt: 3168 Z-score: 3741.5 bits: 701.7 E(85289): 1.2e-201 Smith-Waterman score: 3168; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477) 10 20 30 40 50 60 pF1KE5 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP 370 380 390 400 410 420 430 440 450 460 470 pF1KE5 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL 430 440 450 460 470 477 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:03:50 2016 done: Tue Nov 8 05:03:51 2016 Total Scan time: 7.930 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]