FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5604, 477 aa 1>>>pF1KE5604 477 - 477 aa - 477 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9576+/-0.000964; mu= 13.9522+/- 0.057 mean_var=66.8571+/-13.681, 0's: 0 Z-trim(104.6): 12 B-trim: 0 in 0/51 Lambda= 0.156856 statistics sampled from 7980 (7983) to 7980 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.245), width: 16 Scan time: 2.600 The best scores are: opt bits E(32554) CCDS31770.1 YARS2 gene_id:51067|Hs108|chr12 ( 477) 3168 726.1 2e-209 >>CCDS31770.1 YARS2 gene_id:51067|Hs108|chr12 (477 aa) initn: 3168 init1: 3168 opt: 3168 Z-score: 3873.4 bits: 726.1 E(32554): 2e-209 Smith-Waterman score: 3168; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477) 10 20 30 40 50 60 pF1KE5 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 HLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 EGLDSAKRCTQALYHSSIDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRKANAIP 370 380 390 400 410 420 430 440 450 460 470 pF1KE5 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIKWLQL 430 440 450 460 470 477 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:03:50 2016 done: Tue Nov 8 05:03:50 2016 Total Scan time: 2.600 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]