FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1540, 125 aa
  1>>>pF1KE1540 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3302+/-0.000305; mu= 11.8247+/- 0.019
 mean_var=77.1423+/-15.074, 0's: 0 Z-trim(117.7): 4  B-trim: 75 in 1/49
 Lambda= 0.146025
 statistics sampled from 29944 (29948) to 29944 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.351), width:  16
 Scan time:  4.880

The best scores are:                                      opt bits E(85289)
NP_004699 (OMIM: 604583) programmed cell death pro ( 125)  779 172.5 1.6e-43
XP_005259449 (OMIM: 604583) PREDICTED: programmed  ( 129)  553 124.9 3.5e-29


>>NP_004699 (OMIM: 604583) programmed cell death protein  (125 aa)
 initn: 779 init1: 779 opt: 779  Z-score: 902.3  bits: 172.5 E(85289): 1.6e-43
Smith-Waterman score: 779; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE1 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSD
               70        80        90       100       110       120

            
pF1KE1 EDDDY
       :::::
NP_004 EDDDY
            

>>XP_005259449 (OMIM: 604583) PREDICTED: programmed cell  (129 aa)
 initn: 567 init1: 553 opt: 553  Z-score: 644.8  bits: 124.9 E(85289): 3.5e-29
Smith-Waterman score: 553; 94.7% identity (97.9% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE1 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSD
       :::::::::::::::::::::::::::: ..: :.                         
XP_005 LVKPEKTKAVENYLIQMARYGQLSEKVSLDSLEELYCYLLYQNMASKGQLHLHWITEFLL
               70        80        90       100       110       120

                
pF1KE1 EDDDY    
                
XP_005 TLRRNCWRE
                




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:20:51 2016 done: Mon Nov  7 01:20:52 2016
 Total Scan time:  4.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]