Result of FASTA (omim) for
pFN21AE1084
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1084, 212 aa
1>>>pF1KE1084 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8510+/-0.000296; mu= 12.1078+/- 0.019
mean_var=76.3065+/-15.231, 0's: 0 Z-trim(119.1): 7 B-trim: 1290 in 1/53
Lambda= 0.146823
statistics sampled from 32832 (32839) to 32832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.385), width: 16
Scan time: 6.690
The best scores are: opt bits E(85289)
NP_000591 (OMIM: 108010,147620,148000,266600,60430 ( 212) 1364 297.4 1.2e-80
XP_011513692 (OMIM: 108010,147620,148000,266600,60 ( 212) 1364 297.4 1.2e-80
XP_005249802 (OMIM: 108010,147620,148000,266600,60 ( 252) 980 216.1 4.1e-56
NP_001305024 (OMIM: 108010,147620,148000,266600,60 ( 136) 865 191.6 5.2e-49
>>NP_000591 (OMIM: 108010,147620,148000,266600,604302) i (212 aa)
initn: 1364 init1: 1364 opt: 1364 Z-score: 1569.2 bits: 297.4 E(85289): 1.2e-80
Smith-Waterman score: 1364; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ
130 140 150 160 170 180
190 200 210
pF1KE1 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
::::::::::::::::::::::::::::::::
NP_000 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
190 200 210
>>XP_011513692 (OMIM: 108010,147620,148000,266600,604302 (212 aa)
initn: 1364 init1: 1364 opt: 1364 Z-score: 1569.2 bits: 297.4 E(85289): 1.2e-80
Smith-Waterman score: 1364; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ
130 140 150 160 170 180
190 200 210
pF1KE1 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
::::::::::::::::::::::::::::::::
XP_011 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
190 200 210
>>XP_005249802 (OMIM: 108010,147620,148000,266600,604302 (252 aa)
initn: 980 init1: 980 opt: 980 Z-score: 1128.4 bits: 216.1 E(85289): 4.1e-56
Smith-Waterman score: 980; 99.3% identity (100.0% similar) in 152 aa overlap (6-157:60-211)
10 20 30
pF1KE1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGED
:.::::::::::::::::::::::::::::
XP_005 VAQGGLAGGQQQRQAPSCAVSSPLRSLPSGTGAFGPVAFSLGLLLVLPAAFPAPVPPGED
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE1 SKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKM
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE1 AEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQ
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE1 KKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
::
XP_005 KKVGVSSFPQLGVGEDRLKDSVLDNSGMQCHFQKRRLHVNKRV
210 220 230 240 250
>>NP_001305024 (OMIM: 108010,147620,148000,266600,604302 (136 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1000.9 bits: 191.6 E(85289): 5.2e-49
Smith-Waterman score: 865; 100.0% identity (100.0% similar) in 136 aa overlap (77-212:1-136)
50 60 70 80 90 100
pF1KE1 LTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF
::::::::::::::::::::::::::::::
NP_001 MCESSKEALAENNLNLPKMAEKDGCFQSGF
10 20 30
110 120 130 140 150 160
pF1KE1 NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITT
40 50 60 70 80 90
170 180 190 200 210
pF1KE1 PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
100 110 120 130
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:09:08 2016 done: Sat Nov 5 09:09:09 2016
Total Scan time: 6.690 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]