FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6936, 229 aa 1>>>pF1KB6936 229 - 229 aa - 229 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5719+/-0.000304; mu= 8.4872+/- 0.019 mean_var=115.6909+/-23.588, 0's: 0 Z-trim(121.0): 76 B-trim: 1085 in 4/54 Lambda= 0.119241 statistics sampled from 36885 (37063) to 36885 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.435), width: 16 Scan time: 7.090 The best scores are: opt bits E(85289) XP_011525921 (OMIM: 605816) PREDICTED: interleukin ( 229) 1605 286.2 3.1e-77 NP_005746 (OMIM: 605816) interleukin-27 subunit be ( 229) 1605 286.2 3.1e-77 NP_001833 (OMIM: 118946) ciliary neurotrophic fact ( 372) 366 73.2 6.6e-13 XP_016869752 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 366 73.2 6.6e-13 XP_016869753 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 366 73.2 6.6e-13 XP_016869754 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 366 73.2 6.6e-13 NP_671693 (OMIM: 118946) ciliary neurotrophic fact ( 372) 366 73.2 6.6e-13 NP_001193940 (OMIM: 118946) ciliary neurotrophic f ( 372) 366 73.2 6.6e-13 XP_016869751 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 366 73.3 7.5e-13 XP_016869750 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 366 73.3 7.5e-13 XP_016869749 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 366 73.3 7.5e-13 NP_001136256 (OMIM: 600939,614188) interleukin-11 ( 422) 356 71.5 2.4e-12 XP_011526726 (OMIM: 272430,604237) PREDICTED: cyto ( 404) 213 46.9 5.9e-05 NP_001193795 (OMIM: 147880,614689,614752) interleu ( 352) 212 46.7 6e-05 XP_011526725 (OMIM: 272430,604237) PREDICTED: cyto ( 419) 213 46.9 6.1e-05 NP_004741 (OMIM: 272430,604237) cytokine receptor- ( 422) 213 46.9 6.1e-05 XP_011526724 (OMIM: 272430,604237) PREDICTED: cyto ( 423) 213 46.9 6.1e-05 NP_852004 (OMIM: 147880,614689,614752) interleukin ( 365) 212 46.7 6.1e-05 XP_006711362 (OMIM: 147880,614689,614752) PREDICTE ( 381) 212 46.7 6.3e-05 NP_000556 (OMIM: 147880,614689,614752) interleukin ( 468) 212 46.8 7.4e-05 XP_006711361 (OMIM: 147880,614689,614752) PREDICTE ( 484) 212 46.8 7.6e-05 XP_016856689 (OMIM: 147880,614689,614752) PREDICTE ( 501) 212 46.8 7.9e-05 XP_016856688 (OMIM: 147880,614689,614752) PREDICTE ( 517) 212 46.8 8e-05 NP_001191247 (OMIM: 176761,615554,615555) prolacti ( 268) 204 45.3 0.00012 NP_001191246 (OMIM: 176761,615554,615555) prolacti ( 288) 204 45.3 0.00013 XP_016865135 (OMIM: 176761,615554,615555) PREDICTE ( 309) 204 45.3 0.00014 NP_001191244 (OMIM: 176761,615554,615555) prolacti ( 349) 204 45.3 0.00015 NP_001191245 (OMIM: 176761,615554,615555) prolacti ( 376) 204 45.4 0.00016 XP_006714547 (OMIM: 176761,615554,615555) PREDICTE ( 622) 204 45.5 0.00024 XP_011512371 (OMIM: 176761,615554,615555) PREDICTE ( 622) 204 45.5 0.00024 NP_000940 (OMIM: 176761,615554,615555) prolactin r ( 622) 204 45.5 0.00024 XP_011512370 (OMIM: 176761,615554,615555) PREDICTE ( 622) 204 45.5 0.00024 NP_001185618 (OMIM: 601007,614963) leptin receptor ( 896) 195 44.1 0.00094 NP_001003679 (OMIM: 601007,614963) leptin receptor ( 896) 195 44.1 0.00094 NP_001185617 (OMIM: 601007,614963) leptin receptor ( 906) 195 44.1 0.00095 NP_002178 (OMIM: 161561,614890) interleukin-12 sub ( 328) 188 42.6 0.00099 NP_001003680 (OMIM: 601007,614963) leptin receptor ( 958) 195 44.1 0.00099 NP_001185616 (OMIM: 601007,614963) leptin receptor ( 958) 195 44.1 0.00099 NP_002294 (OMIM: 601007,614963) leptin receptor is (1165) 195 44.2 0.0012 NP_004637 (OMIM: 256300,602716) nephrin precursor (1241) 193 43.8 0.0015 XP_016865134 (OMIM: 176761,615554,615555) PREDICTE ( 551) 179 41.2 0.0043 XP_005245197 (OMIM: 147880,614689,614752) PREDICTE ( 338) 175 40.3 0.0048 XP_005245196 (OMIM: 147880,614689,614752) PREDICTE ( 360) 175 40.4 0.005 XP_016856690 (OMIM: 147880,614689,614752) PREDICTE ( 371) 175 40.4 0.0051 >>XP_011525921 (OMIM: 605816) PREDICTED: interleukin-27 (229 aa) initn: 1605 init1: 1605 opt: 1605 Z-score: 1507.6 bits: 286.2 E(85289): 3.1e-77 Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229) 10 20 30 40 50 60 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV 130 140 150 160 170 180 190 200 210 220 pF1KB6 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK 190 200 210 220 >>NP_005746 (OMIM: 605816) interleukin-27 subunit beta p (229 aa) initn: 1605 init1: 1605 opt: 1605 Z-score: 1507.6 bits: 286.2 E(85289): 3.1e-77 Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229) 10 20 30 40 50 60 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV 130 140 150 160 170 180 190 200 210 220 pF1KB6 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK 190 200 210 220 >>NP_001833 (OMIM: 118946) ciliary neurotrophic factor r (372 aa) initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: NP_001 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 80 90 100 110 120 130 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : NP_001 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 140 150 160 170 180 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. NP_001 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 190 200 210 220 230 240 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: NP_001 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 250 260 270 280 290 300 NP_001 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 310 320 330 340 350 360 >>XP_016869752 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa) initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 80 90 100 110 120 130 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 140 150 160 170 180 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 190 200 210 220 230 240 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 250 260 270 280 290 300 XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 310 320 330 340 350 360 >>XP_016869753 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa) initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 80 90 100 110 120 130 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 140 150 160 170 180 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 190 200 210 220 230 240 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 250 260 270 280 290 300 XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 310 320 330 340 350 360 >>XP_016869754 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa) initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 80 90 100 110 120 130 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 140 150 160 170 180 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 190 200 210 220 230 240 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 250 260 270 280 290 300 XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 310 320 330 340 350 360 >>NP_671693 (OMIM: 118946) ciliary neurotrophic factor r (372 aa) initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: NP_671 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 80 90 100 110 120 130 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : NP_671 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 140 150 160 170 180 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. NP_671 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 190 200 210 220 230 240 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: NP_671 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 250 260 270 280 290 300 NP_671 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 310 320 330 340 350 360 >>NP_001193940 (OMIM: 118946) ciliary neurotrophic facto (372 aa) initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: NP_001 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 80 90 100 110 120 130 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : NP_001 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 140 150 160 170 180 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. NP_001 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 190 200 210 220 230 240 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: NP_001 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 250 260 270 280 290 300 NP_001 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 310 320 330 340 350 360 >>XP_016869751 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa) initn: 296 init1: 103 opt: 366 Z-score: 351.7 bits: 73.3 E(85289): 7.5e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:175-367) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 150 160 170 180 190 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 200 210 220 230 240 250 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 260 270 280 290 300 310 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 320 330 340 350 360 370 XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 380 390 400 410 420 430 >>XP_016869750 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa) initn: 296 init1: 103 opt: 366 Z-score: 351.7 bits: 73.3 E(85289): 7.5e-13 Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:175-367) 10 20 30 40 50 pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA :: : ..::.. :: . ::: :: XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP-- 150 160 170 180 190 60 70 80 90 100 110 pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG .:. . :. . . .. : .. .. : : ..::: : ..... . : XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG 200 210 220 230 240 250 120 130 140 150 160 170 pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR ... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::. XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP 260 270 280 290 300 310 180 190 200 210 220 pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK ....: ..:. . . .: .::::.: .. : ::::. : :: XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR 320 330 340 350 360 370 XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA 380 390 400 410 420 430 229 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 14:27:40 2016 done: Sat Nov 5 14:27:41 2016 Total Scan time: 7.090 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]