FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5216, 199 aa
  1>>>pF1KE5216 199 - 199 aa - 199 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7075+/-0.000276; mu= 4.6564+/- 0.017
 mean_var=155.4316+/-30.742, 0's: 0 Z-trim(123.9): 2  B-trim: 0 in 0/57
 Lambda= 0.102874
 statistics sampled from 44519 (44521) to 44519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.522), width:  16
 Scan time:  6.650

The best scores are:                                      opt bits E(85289)
NP_006387 (OMIM: 606044) Sjoegren syndrome/sclerod ( 199) 1341 209.3 3.3e-54
NP_001289953 (OMIM: 606044) Sjoegren syndrome/scle ( 162) 1097 173.0 2.2e-43


>>NP_006387 (OMIM: 606044) Sjoegren syndrome/scleroderma  (199 aa)
 initn: 1341 init1: 1341 opt: 1341  Z-score: 1094.2  bits: 209.3 E(85289): 3.3e-54
Smith-Waterman score: 1341; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE5 MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQL
              130       140       150       160       170       180

              190         
pF1KE5 CGLIRACAEALRSLQQLQH
       :::::::::::::::::::
NP_006 CGLIRACAEALRSLQQLQH
              190         

>>NP_001289953 (OMIM: 606044) Sjoegren syndrome/sclerode  (162 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 899.8  bits: 173.0 E(85289): 2.2e-43
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 162 aa overlap (38-199:1-162)

        10        20        30        40        50        60       
pF1KE5 VDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTILLQDKQRK
                                     ::::::::::::::::::::::::::::::
NP_001                               MGDYLLRGYRMLGETCADCGTILLQDKQRK
                                             10        20        30

        70        80        90       100       110       120       
pF1KE5 IYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVPRPEHCEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVPRPEHCEG
               40        50        60        70        80        90

       130       140       150       160       170       180       
pF1KE5 AAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQLCGLIRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQLCGLIRAC
              100       110       120       130       140       150

       190         
pF1KE5 AEALRSLQQLQH
       ::::::::::::
NP_001 AEALRSLQQLQH
              160  




199 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:35:27 2016 done: Mon Nov  7 22:35:28 2016
 Total Scan time:  6.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]