FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5216, 199 aa 1>>>pF1KE5216 199 - 199 aa - 199 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3717+/-0.000678; mu= 6.6756+/- 0.041 mean_var=149.9104+/-29.599, 0's: 0 Z-trim(116.4): 2 B-trim: 0 in 0/53 Lambda= 0.104751 statistics sampled from 17054 (17056) to 17054 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.524), width: 16 Scan time: 2.460 The best scores are: opt bits E(32554) CCDS8104.1 SSSCA1 gene_id:10534|Hs108|chr11 ( 199) 1341 212.8 1.1e-55 CCDS76434.1 SSSCA1 gene_id:10534|Hs108|chr11 ( 162) 1097 175.8 1.2e-44 >>CCDS8104.1 SSSCA1 gene_id:10534|Hs108|chr11 (199 aa) initn: 1341 init1: 1341 opt: 1341 Z-score: 1113.0 bits: 212.8 E(32554): 1.1e-55 Smith-Waterman score: 1341; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199) 10 20 30 40 50 60 pF1KE5 MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTIL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 LQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 RPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQL 130 140 150 160 170 180 190 pF1KE5 CGLIRACAEALRSLQQLQH ::::::::::::::::::: CCDS81 CGLIRACAEALRSLQQLQH 190 >>CCDS76434.1 SSSCA1 gene_id:10534|Hs108|chr11 (162 aa) initn: 1097 init1: 1097 opt: 1097 Z-score: 914.9 bits: 175.8 E(32554): 1.2e-44 Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 162 aa overlap (38-199:1-162) 10 20 30 40 50 60 pF1KE5 VDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTILLQDKQRK :::::::::::::::::::::::::::::: CCDS76 MGDYLLRGYRMLGETCADCGTILLQDKQRK 10 20 30 70 80 90 100 110 120 pF1KE5 IYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVPRPEHCEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 IYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVPRPEHCEG 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 AAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQLCGLIRAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 AAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQLCGLIRAC 100 110 120 130 140 150 190 pF1KE5 AEALRSLQQLQH :::::::::::: CCDS76 AEALRSLQQLQH 160 199 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:35:26 2016 done: Mon Nov 7 22:35:27 2016 Total Scan time: 2.460 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]