FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6342, 384 aa 1>>>pF1KE6342 384 - 384 aa - 384 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4864+/-0.000859; mu= 10.8177+/- 0.052 mean_var=77.0497+/-15.110, 0's: 0 Z-trim(107.3): 14 B-trim: 0 in 0/51 Lambda= 0.146113 statistics sampled from 9513 (9520) to 9513 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.292), width: 16 Scan time: 2.270 The best scores are: opt bits E(32554) CCDS12344.1 CALR3 gene_id:125972|Hs108|chr19 ( 384) 2655 569.0 2.4e-162 CCDS12288.1 CALR gene_id:811|Hs108|chr19 ( 417) 951 209.8 3.6e-54 >>CCDS12344.1 CALR3 gene_id:125972|Hs108|chr19 (384 aa) initn: 2655 init1: 2655 opt: 2655 Z-score: 3028.0 bits: 569.0 E(32554): 2.4e-162 Smith-Waterman score: 2655; 99.7% identity (100.0% similar) in 384 aa overlap (1-384:1-384) 10 20 30 40 50 60 pF1KE6 MARALVQFWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MARALVQLWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 SDWNGDLDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENIGAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SDWNGDLDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENIGAI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 GLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEE 310 320 330 340 350 360 370 380 pF1KE6 EELLSGKINRHEHYFNQFHRRNEL :::::::::::::::::::::::: CCDS12 EELLSGKINRHEHYFNQFHRRNEL 370 380 >>CCDS12288.1 CALR gene_id:811|Hs108|chr19 (417 aa) initn: 1193 init1: 878 opt: 951 Z-score: 1086.1 bits: 209.8 E(32554): 3.6e-54 Smith-Waterman score: 1312; 52.4% identity (76.8% similar) in 370 aa overlap (14-362:14-383) 10 20 30 40 50 60 pF1KE6 MARALVQFWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK : :: .:::.:.::::. : .::..: . : ::.: :::::::: . CCDS12 MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK ::::::::.:..::::.:: :.::::::.:::.:.::::::..::::::.:.:: ..:: CCDS12 EKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL ...: :.: ::::::::: ::::::...:.: .: :::: : ::::::::.::: CCDS12 DMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDN 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESK--DW-EQTK-----DNKAQDWEK-- .:.::::....::::.: ::.. :: .: :: :: :..: :.: .::.: CCDS12 TYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWDKPE 190 200 210 220 230 240 240 250 260 270 280 pF1KE6 HFLDASTSKQSDWNGDLDGDWPAPMLQKPPYQDGLKPEGI----HKDVWLHRKMKNTDYL :. : ...: ::. ..::.: :..:.: :. ::. : .: .:.: .. : .: CCDS12 HIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYS 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE6 TQYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREM--- . .. ..:.:..::.::::.:::::::::::.:: ::..::. ::: ::. :..: CCDS12 PDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDK 310 320 330 340 350 360 350 360 370 380 pF1KE6 ----DAIQAKEEMKKAREEEEEELLSGKINRHEHYFNQFHRRNEL . .. .:: :: .:::: : CCDS12 QDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVPGQAKDEL 370 380 390 400 410 384 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:17:19 2016 done: Tue Nov 8 12:17:20 2016 Total Scan time: 2.270 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]