FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3943, 374 aa 1>>>pF1KE3943 374 - 374 aa - 374 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3064+/-0.000331; mu= 16.9317+/- 0.021 mean_var=82.8748+/-16.355, 0's: 0 Z-trim(115.6): 36 B-trim: 0 in 0/55 Lambda= 0.140884 statistics sampled from 26048 (26084) to 26048 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.306), width: 16 Scan time: 8.090 The best scores are: opt bits E(85289) NP_060848 (OMIM: 609077) F-box/LRR-repeat protein ( 374) 2500 517.9 1.5e-146 NP_036290 (OMIM: 605653) F-box/LRR-repeat protein ( 428) 199 50.3 9.8e-06 XP_005266393 (OMIM: 605653) PREDICTED: F-box/LRR-r ( 428) 199 50.3 9.8e-06 NP_036291 (OMIM: 609087) F-box/LRR-repeat protein ( 434) 170 44.4 0.00059 >>NP_060848 (OMIM: 609077) F-box/LRR-repeat protein 8 [H (374 aa) initn: 2500 init1: 2500 opt: 2500 Z-score: 2752.3 bits: 517.9 E(85289): 1.5e-146 Smith-Waterman score: 2500; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374) 10 20 30 40 50 60 pF1KE3 MAEPGEGLPEEVLALIFRHLSLRDRAAAARVCRAWAAAATCSAVWHDTKISCECELEGML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MAEPGEGLPEEVLALIFRHLSLRDRAAAARVCRAWAAAATCSAVWHDTKISCECELEGML 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PPYLSACLDHIHNLRLEFEPSRKPSRRAAIELLMVLAGRAPGLRGLRLECRGEKPLFDAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 PPYLSACLDHIHNLRLEFEPSRKPSRRAAIELLMVLAGRAPGLRGLRLECRGEKPLFDAG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RDVLEAVHAVCGAASQLRHLDLRRLSFTLDDALVLQAARSCPELHSLFLDNSTLVGSVGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 RDVLEAVHAVCGAASQLRHLDLRRLSFTLDDALVLQAARSCPELHSLFLDNSTLVGSVGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GSVLELLEACPRLRALGLHLASLSHAILEALAAPDRAPFALLALRCACPEDARASPLPNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 GSVLELLEACPRLRALGLHLASLSHAILEALAAPDRAPFALLALRCACPEDARASPLPNE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 AWVALRRRHPGLAVELELEPALPAESVTRVLQPAVPVAALRLNLSGDTVGPVRFAAHHYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 AWVALRRRHPGLAVELELEPALPAESVTRVLQPAVPVAALRLNLSGDTVGPVRFAAHHYA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 ATLCALEVRAAASAELNAALEELAARCAALREVHCFCVVSHSVLDAFRAHCPRLRTYTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 ATLCALEVRAAASAELNAALEELAARCAALREVHCFCVVSHSVLDAFRAHCPRLRTYTLK 310 320 330 340 350 360 370 pF1KE3 LTREPHPWRPTLVA :::::::::::::: NP_060 LTREPHPWRPTLVA 370 >>NP_036290 (OMIM: 605653) F-box/LRR-repeat protein 3 [H (428 aa) initn: 95 init1: 64 opt: 199 Z-score: 223.9 bits: 50.3 E(85289): 9.8e-06 Smith-Waterman score: 199; 24.0% identity (50.0% similar) in 362 aa overlap (8-351:39-383) 10 20 30 pF1KE3 MAEPGEGLPEEVLALIFRHLSLRDRAAAARVCRAWAA : .... .:..: : ::: :..::: : NP_036 DRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQ 10 20 30 40 50 60 40 50 60 70 80 pF1KE3 AATCSAVWHDTKISC-ECELEGMLPPYLSACLDHI-------HNLRLEFEP----SRKPS . .:. : : ::. ::.: .. :. .:.. : : : NP_036 VFHMPDLWR-----CFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSSKES 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE3 RRAAIELLMVLAGRAPGLRGLRLECRGEKPLFDAGRD-VLEAVHAVCGAASQLRHLDLRR .:: ..: :.. . :. : : .. ..: .. . :. .: ...: : . NP_036 AEAACDILSQLVNCS--LKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKIDD 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE3 LSFTLDDALVLQAARSCPELHSLFLDNSTLVGSVGPGSVLELLEACPRLRALGLHLASLS : .: . .: . :. : ... :.:...: . . : :: :.:. :: NP_036 TPVD-DPSLKVLVANNSDTLKLLKMSSCP---HVSPAGILCVADQCHGLRELALNYHLLS 190 200 210 220 230 210 220 230 240 250 260 pF1KE3 HAILEALAAPDRAPFALLALRCAC--PEDARASPLPNEAWVALRRRHPGLAVELELEPAL .: ::.. .. . : . . : ... . . .: :. :. : :.: . : NP_036 DELLLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSP--KVNLVMYFFL 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE3 PAESVTRVLQPAVPVAALRL--NLSGDTVGPVRFAAHHYAATLCALEVRAAASAELNAAL : .. .:.. : . ..: :..: : .. . : : : : . :. : NP_036 YEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPR----LVELVVCANGLRPLDEEL 300 310 320 330 340 350 330 340 350 360 370 pF1KE3 EELAARCAALREVHC-FCVVSHSVLDAFRAHCPRLRTYTLKLTREPHPWRPTLVA ..: :: : . : :: :.. : : NP_036 IRIAERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWE 360 370 380 390 400 410 NP_036 VSKHLGRVWFPDMMPTW 420 >>XP_005266393 (OMIM: 605653) PREDICTED: F-box/LRR-repea (428 aa) initn: 95 init1: 64 opt: 199 Z-score: 223.9 bits: 50.3 E(85289): 9.8e-06 Smith-Waterman score: 199; 24.0% identity (50.0% similar) in 362 aa overlap (8-351:39-383) 10 20 30 pF1KE3 MAEPGEGLPEEVLALIFRHLSLRDRAAAARVCRAWAA : .... .:..: : ::: :..::: : XP_005 DRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQ 10 20 30 40 50 60 40 50 60 70 80 pF1KE3 AATCSAVWHDTKISC-ECELEGMLPPYLSACLDHI-------HNLRLEFEP----SRKPS . .:. : : ::. ::.: .. :. .:.. : : : XP_005 VFHMPDLWR-----CFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSSKES 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE3 RRAAIELLMVLAGRAPGLRGLRLECRGEKPLFDAGRD-VLEAVHAVCGAASQLRHLDLRR .:: ..: :.. . :. : : .. ..: .. . :. .: ...: : . XP_005 AEAACDILSQLVNCS--LKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKIDD 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE3 LSFTLDDALVLQAARSCPELHSLFLDNSTLVGSVGPGSVLELLEACPRLRALGLHLASLS : .: . .: . :. : ... :.:...: . . : :: :.:. :: XP_005 TPVD-DPSLKVLVANNSDTLKLLKMSSCP---HVSPAGILCVADQCHGLRELALNYHLLS 190 200 210 220 230 210 220 230 240 250 260 pF1KE3 HAILEALAAPDRAPFALLALRCAC--PEDARASPLPNEAWVALRRRHPGLAVELELEPAL .: ::.. .. . : . . : ... . . .: :. :. : :.: . : XP_005 DELLLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSP--KVNLVMYFFL 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE3 PAESVTRVLQPAVPVAALRL--NLSGDTVGPVRFAAHHYAATLCALEVRAAASAELNAAL : .. .:.. : . ..: :..: : .. . : : : : . :. : XP_005 YEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPR----LVELVVCANGLRPLDEEL 300 310 320 330 340 350 330 340 350 360 370 pF1KE3 EELAARCAALREVHC-FCVVSHSVLDAFRAHCPRLRTYTLKLTREPHPWRPTLVA ..: :: : . : :: :.. : : XP_005 IRIAERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWE 360 370 380 390 400 410 XP_005 VSKHLGRVWFPDMMPTW 420 >>NP_036291 (OMIM: 609087) F-box/LRR-repeat protein 21 [ (434 aa) initn: 156 init1: 101 opt: 170 Z-score: 192.0 bits: 44.4 E(85289): 0.00059 Smith-Waterman score: 170; 23.3% identity (48.5% similar) in 369 aa overlap (8-364:45-401) 10 20 30 pF1KE3 MAEPGEGLPEEVLALIFRHLSLRDRAAAARVCRAWAA ::..:. ::..: : ::: :. ::: : NP_036 LSGAAKQPKVGFYSSLNQTHTHTVLLDWGSLPHHVVLQIFQYLPLLDRACASSVCRRWNE 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 AATCSAVWHDTKI----SCECELEGMLPPYLSACLD-HIHNLR-LEFE-PSRKPSRRAAI . : .:. .. : ... : .. . :. .:. . :. : : .:: NP_036 VFHISDLWRKFEFELNQSATSSFKSTHPDLIQQIIKKHFAHLQYVSFKVDSSAESAEAAC 80 90 100 110 120 130 100 110 120 130 140 pF1KE3 ELLMVLAGRAPGLRGLRLECRGEKPLFDAGRD--VLEAVHAVCGAASQLRHLDLRRLSFT ..: :.. . :: :: : . . :. .: ...: . .. NP_036 DILSQLVNCSIQTLGL---ISTAKPSFMNVSESHFVSALTVVFINSKSLSSIKIEDTPVD 140 150 160 170 180 190 150 160 170 180 190 200 pF1KE3 LDDALVLQAARSCPELHSLFLDNSTLVGSVGPGSVLELLEACPRLRALGLHLASLSHAIL : .: . .: . :. ... :.: : .: . . : :: :.:. :. .. NP_036 -DPSLKILVANNSDTLRLPKMSSCPHVSSDG---ILCVADRCQGLRELALNYYILTDELF 200 210 220 230 240 210 220 230 240 250 260 pF1KE3 EALAAPDRAPFALLALRCAC--PEDARASPLPNEAWVALRRRHPGLAVELELEPALPAES ::.. .. . : . . : . . . ...: :: .. : . : ... : : NP_036 LALSSETHVNLEHLRIDVVSENPGQIKFHAVKKHSWDALIKHSPRVNVVMHFF--LYEEE 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE3 VTRVLQPAVPVAALRLNLSGDTVGPVRFAAHHYAATLCALEVRAAASAELNAALEELAAR .. .::. : .. : . : : . . : : : : :. : .: . NP_036 FETFFKEETPVTHLYFGRSVSKVVLGRVGLN--CPRLIELVVCANDLQPLDNELICIAEH 310 320 330 340 350 360 330 340 350 360 370 pF1KE3 CAALREVHCF-CVVSHSVLDAFRAHCPRLRTYTLKLTREPHPWRPTLVA :. : . : :: :.. : : : : :.. .: NP_036 CTNLTALGLSKCEVSCSAFIRFVRLCER-RLTQLSVMEEVLIPDEDYSLDEIHTEVSKYL 370 380 390 400 410 420 NP_036 GRVWFPDVMPLW 430 374 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:43:42 2016 done: Sun Nov 6 08:43:43 2016 Total Scan time: 8.090 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]