Result of FASTA (omim) for
pFN21AB6530
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6530, 279 aa
1>>>pF1KB6530 279 - 279 aa - 279 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4919+/-0.00059; mu= 1.7957+/- 0.036
mean_var=428.4578+/-110.434, 0's: 0 Z-trim(115.8): 271 B-trim: 1375 in 1/50
Lambda= 0.061961
statistics sampled from 26234 (26530) to 26234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.311), width: 16
Scan time: 6.700
The best scores are: opt bits E(85289)
NP_001305823 (OMIM: 602633) four and a half LIM do ( 279) 2121 203.9 2.7e-52
NP_001305824 (OMIM: 602633) four and a half LIM do ( 279) 2121 203.9 2.7e-52
NP_001305825 (OMIM: 602633) four and a half LIM do ( 279) 2121 203.9 2.7e-52
XP_011509100 (OMIM: 602633) PREDICTED: four and a ( 279) 2121 203.9 2.7e-52
NP_001034581 (OMIM: 602633) four and a half LIM do ( 279) 2121 203.9 2.7e-52
NP_963849 (OMIM: 602633) four and a half LIM domai ( 279) 2121 203.9 2.7e-52
NP_963851 (OMIM: 602633) four and a half LIM domai ( 279) 2121 203.9 2.7e-52
NP_001441 (OMIM: 602633) four and a half LIM domai ( 279) 2121 203.9 2.7e-52
NP_001309396 (OMIM: 605126) four and a half LIM do ( 284) 1381 137.8 2.2e-32
NP_001309395 (OMIM: 605126) four and a half LIM do ( 284) 1381 137.8 2.2e-32
NP_001164278 (OMIM: 605126) four and a half LIM do ( 284) 1381 137.8 2.2e-32
NP_065228 (OMIM: 605126) four and a half LIM domai ( 284) 1381 137.8 2.2e-32
NP_001305828 (OMIM: 602633) four and a half LIM do ( 171) 1303 130.5 2.2e-30
NP_004459 (OMIM: 602790) four and a half LIM domai ( 280) 1301 130.6 3.2e-30
NP_001305826 (OMIM: 602633) four and a half LIM do ( 165) 1260 126.6 3e-29
NP_001305827 (OMIM: 602633) four and a half LIM do ( 165) 1260 126.6 3e-29
NP_001153176 (OMIM: 300163,300695,300696,300717,30 ( 280) 1158 117.8 2.2e-26
NP_001153172 (OMIM: 300163,300695,300696,300717,30 ( 280) 1158 117.8 2.2e-26
XP_006724810 (OMIM: 300163,300695,300696,300717,30 ( 280) 1158 117.8 2.2e-26
XP_016884846 (OMIM: 300163,300695,300696,300717,30 ( 280) 1158 117.8 2.2e-26
NP_001440 (OMIM: 300163,300695,300696,300717,30071 ( 280) 1158 117.8 2.2e-26
NP_001161291 (OMIM: 300163,300695,300696,300717,30 ( 280) 1158 117.8 2.2e-26
NP_001153171 (OMIM: 300163,300695,300696,300717,30 ( 296) 1158 117.9 2.3e-26
NP_001153173 (OMIM: 300163,300695,300696,300717,30 ( 309) 1158 117.9 2.3e-26
XP_006724807 (OMIM: 300163,300695,300696,300717,30 ( 323) 979 101.9 1.6e-21
NP_001153174 (OMIM: 300163,300695,300696,300717,30 ( 323) 979 101.9 1.6e-21
XP_006724808 (OMIM: 300163,300695,300696,300717,30 ( 323) 979 101.9 1.6e-21
XP_006724809 (OMIM: 300163,300695,300696,300717,30 ( 323) 979 101.9 1.6e-21
XP_006724806 (OMIM: 300163,300695,300696,300717,30 ( 339) 979 102.0 1.6e-21
NP_001230807 (OMIM: 602790) four and a half LIM do ( 172) 825 87.7 1.6e-17
NP_001153175 (OMIM: 300163,300695,300696,300717,30 ( 194) 658 72.9 5.2e-13
NP_001317588 (OMIM: 300163,300695,300696,300717,30 ( 210) 658 73.0 5.5e-13
XP_016856164 (OMIM: 602790) PREDICTED: four and a ( 147) 532 61.4 1.1e-09
XP_016859582 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 460 55.5 1.4e-07
XP_016859580 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 460 55.5 1.4e-07
XP_016859583 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 460 55.5 1.4e-07
XP_016859581 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 460 55.5 1.4e-07
XP_005263767 (OMIM: 607908,616827) PREDICTED: LIM ( 272) 435 53.2 6.3e-07
XP_011537496 (OMIM: 605906,609452) PREDICTED: LIM ( 400) 412 51.4 3.2e-06
XP_011537495 (OMIM: 605906,609452) PREDICTED: LIM ( 463) 412 51.5 3.4e-06
XP_016871096 (OMIM: 605906,609452) PREDICTED: LIM ( 463) 412 51.5 3.4e-06
NP_001073583 (OMIM: 605906,609452) LIM domain-bind ( 617) 412 51.7 4e-06
XP_011537493 (OMIM: 605906,609452) PREDICTED: LIM ( 633) 412 51.7 4.1e-06
XP_005269523 (OMIM: 605906,609452) PREDICTED: LIM ( 664) 412 51.8 4.2e-06
XP_011537492 (OMIM: 605906,609452) PREDICTED: LIM ( 680) 412 51.8 4.2e-06
XP_011537491 (OMIM: 605906,609452) PREDICTED: LIM ( 696) 412 51.8 4.3e-06
XP_005269521 (OMIM: 605906,609452) PREDICTED: LIM ( 727) 412 51.8 4.4e-06
NP_009009 (OMIM: 605906,609452) LIM domain-binding ( 727) 412 51.8 4.4e-06
NP_001165081 (OMIM: 605906,609452) LIM domain-bind ( 732) 412 51.8 4.4e-06
XP_011537490 (OMIM: 605906,609452) PREDICTED: LIM ( 743) 412 51.8 4.4e-06
>>NP_001305823 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001305824 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001305825 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>XP_011509100 (OMIM: 602633) PREDICTED: four and a half (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
XP_011 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001034581 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_963849 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
NP_963 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_963851 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
NP_963 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001441 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 2121 init1: 2121 opt: 2121 Z-score: 1059.8 bits: 203.9 E(85289): 2.7e-52
Smith-Waterman score: 2121; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270
pF1KB6 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
:::::::::::::::::::::::::::::::::::::::
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001309396 (OMIM: 605126) four and a half LIM domain (284 aa)
initn: 1911 init1: 1344 opt: 1381 Z-score: 702.2 bits: 137.8 E(85289): 2.2e-32
Smith-Waterman score: 1381; 59.4% identity (85.3% similar) in 278 aa overlap (2-279:3-280)
10 20 30 40 50
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
NP_001 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
NP_001 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
NP_001 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
NP_001 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICF
190 200 210 220 230 240
240 250 260 270
pF1KB6 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
.. :::..:::: :::.::::.::::. .:.: ::. .
NP_001 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
250 260 270 280
>>NP_001309395 (OMIM: 605126) four and a half LIM domain (284 aa)
initn: 1911 init1: 1344 opt: 1381 Z-score: 702.2 bits: 137.8 E(85289): 2.2e-32
Smith-Waterman score: 1381; 59.4% identity (85.3% similar) in 278 aa overlap (2-279:3-280)
10 20 30 40 50
pF1KB6 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDR
: .: :..:. ::.::::.:...:::::.:.. .:.: :::: ::: : ::: ::::
NP_001 MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HWHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKG
::::.::.:..: .:::.::::::...::::.::::: :::: .::.:::::.::::.::
NP_001 HWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 SSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQ
. ::::::.:. :.:::::: .: :.. :.::::.::. : : ::: ::.::.:. .:
NP_001 NYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 PWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISF
::::::.:..:::.: ..: .:::. .:..:. :::.::..:..::::: :.:.: :
NP_001 LWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICF
190 200 210 220 230 240
240 250 260 270
pF1KB6 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
.. :::..:::: :::.::::.::::. .:.: ::. .
NP_001 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI
250 260 270 280
279 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:26:22 2016 done: Mon Nov 7 01:26:23 2016
Total Scan time: 6.700 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]